Factsheet for Solyc02g092970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g061040.2.1
Solyc08g077200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	Solyc06g061040.2.1	AT1G32380.1	21798944
AT2G15310.1	Solyc08g077200.2.1	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064241	Potato	cytosol	93.19	98.34
PGSC0003DMT400075807	Potato	cytosol	93.19	98.34
PGSC0003DMT400064240	Potato	cytosol	86.91	97.65
Solyc01g100860.2.1	Tomato	unclear	81.68	86.19
Solyc05g005190.2.1	Tomato	nucleus	81.68	86.19
Solyc01g008000.2.1	Tomato	plastid, unclear	81.15	74.16
Solyc01g100870.2.1	Tomato	plastid	72.25	65.71
Solyc03g096910.2.1	Tomato	cytosol	41.88	60.61
Solyc06g072800.2.1	Tomato	cytosol	41.88	60.61
AT2G15310.1	Thale cress	mitochondrion	62.83	58.54
CDY48224	Canola	mitochondrion	60.21	56.1
Solyc07g006640.2.1	Tomato	plastid	52.88	55.49
CDX71216	Canola	mitochondrion	60.21	55.02
OQU85607	Sorghum	cytosol, mitochondrion	50.79	54.19
Solyc12g099080.1.1	Tomato	unclear	61.78	52.91
Zm00001d017650_P002	Maize	cytosol	48.69	52.25
Solyc03g005300.2.1	Tomato	cytosol	49.74	51.91
Solyc04g025560.2.1	Tomato	unclear	63.35	47.83
Solyc07g014650.2.1	Tomato	cytosol	40.84	46.15
Solyc10g074630.1.1	Tomato	cytosol	30.37	30.05
Bra036410.1-P	Field mustard	mitochondrion	60.21	27.38

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4BD93	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
EnsemblPlantsGene:Solyc02g092970.2	EnsemblPlants:Solyc02g092970.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002768302	:	:

Description

No Description!

Coordinates

chr2:+:53920842..53921843

Molecular Weight (calculated)

21829.5 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.224

Length

191 amino acids

Sequence
(BLAST)

001: MGMSISKFVK KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVNTIPTIG FNVETVEYKN SSFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRI
101: SEARDELHRM LNEEELRGAT ILVFANKQDL PNAMNVADIT DKLGLRSLRQ RRWYIQSACA TSGQGLYEGL DWLSHNITGK ARTLLPFNLL F

Best Arabidopsis Sequence Match ( AT1G70490.5 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A

Arabidopsis Description

ARF2-AADP-ribosylation factor 2-B [Source:UniProtKB/Swiss-Prot;Acc:P0DH91]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.