CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93837
CDY01279
CDY32299
CDY68772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	CDX93837	AT1G32380.1	21798944
AT2G15310.1	CDY01279	AT1G32380.1	21798944
AT2G15310.1	CDY32299	AT1G32380.1	21798944
AT2G15310.1	CDY68772	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71216	Canola	mitochondrion	99.02	97.13
AT2G15310.1	Thale cress	mitochondrion	89.76	89.76
CDY47221	Canola	mitochondrion	57.56	65.19
CDY53050	Canola	cytosol	57.07	64.64
PGSC0003DMT400064241	Potato	cytosol	57.07	64.64
PGSC0003DMT400075807	Potato	cytosol	57.07	64.64
CDX93979	Canola	mitochondrion, peroxisome	57.07	64.64
PGSC0003DMT400064240	Potato	cytosol	53.17	64.12
CDY03747	Canola	mitochondrion, peroxisome	56.59	64.09
CDY54291	Canola	mitochondrion, peroxisome	56.59	64.09
CDY51415	Canola	cytosol	56.59	64.09
CDY27506	Canola	cytosol	56.59	64.09
CDY25787	Canola	mitochondrion, peroxisome	56.59	64.09
CDY11588	Canola	mitochondrion, peroxisome	56.59	64.09
CDY09441	Canola	mitochondrion, peroxisome	56.59	64.09
CDY04706	Canola	mitochondrion, peroxisome	56.59	64.09
CDY37791	Canola	cytosol	56.59	64.09
CDY44152	Canola	mitochondrion, peroxisome	56.59	64.09
CDY41444	Canola	mitochondrion	56.59	64.09
CDX80083	Canola	cytosol	56.59	64.09
CDX89139	Canola	cytosol	56.59	64.09
CDX91717	Canola	mitochondrion	56.59	64.09
CDY47137	Canola	peroxisome	56.1	63.54
CDX75849	Canola	cytosol	35.61	63.48
CDX95712	Canola	cytosol	58.54	63.16
CDX83340	Canola	cytosol	58.54	62.83
CDX68343	Canola	cytosol	54.15	60.99
Solyc02g092970.2.1	Tomato	cytosol	56.1	60.21
CDX69567	Canola	mitochondrion	59.51	59.22
CDY09875	Canola	mitochondrion	59.02	56.81
CDY23500	Canola	cytosol	58.54	56.07
CDY16963	Canola	cytosol	48.78	52.08
CDX69406	Canola	cytosol	48.78	52.08
CDY34756	Canola	cytosol	45.85	51.65
CDY45596	Canola	cytosol	45.85	51.65
CDX76793	Canola	cytosol	45.85	51.65
CDX75192	Canola	cytosol	45.85	51.65
CDX68781	Canola	cytosol	45.85	51.65
CDY28739	Canola	cytosol	47.8	51.04
CDY23463	Canola	cytosol	47.8	51.04
CDY43149	Canola	cytosol	47.8	51.04
CDY36172	Canola	cytosol	43.9	49.45
Bra036410.1-P	Field mustard	mitochondrion	99.02	48.33
OQU85607	Sorghum	cytosol, mitochondrion	41.95	48.04
Zm00001d017650_P002	Maize	cytosol	40.98	47.19
CDY36874	Canola	cytosol	40.98	45.9
CDY53727	Canola	cytosol	40.49	45.36
CDY16265	Canola	cytosol	40.49	45.36
CDY29751	Canola	cytosol	40.0	44.81
CDY36479	Canola	cytosol	37.56	41.62
CDY29231	Canola	cytosol	37.56	41.62
CDY13039	Canola	cytosol	37.56	31.43
CDY38908	Canola	cytosol	27.32	27.32
CDY25962	Canola	mitochondrion	36.1	26.71
CDY31913	Canola	cytosol	26.34	26.21
CDY00519	Canola	cytosol	26.34	26.21
CDY32591	Canola	cytosol	27.32	22.13

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:A0A078IFU4	UniProt:A0A078IFU4	EnsemblPlants:CDY48224	ProteinID:CDY48224
ProteinID:CDY48224.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00089066001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF297	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EC8AAC
SEG:seg	:	:	:	:	:

Description

BnaA07g03830DBnaA07g03830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFU4]

Coordinates

chrLK032760:+:131599..133288

Molecular Weight (calculated)

23082.8 Da

IEP (calculated)

10.562

GRAVY (calculated)

-0.301

Length

205 amino acids

Sequence
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNSQGLIF VVDSSDSARL
101: SEARNELHRI LTNNELQNAC VLVFANKQDS RNALPVDQVA NNLGLHGLTK RCWFIQGTSA ITGQGLYEGL EWLSKTIPNK TERSSSLGSF RSDSSERRLV
201: RGVKY

Best Arabidopsis Sequence Match ( AT2G15310.1 )
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNAQGLIF VVDSSDSERL
101: SEARNELHRI LTDNELEGAC VLVFANKQDS RNALPVAEVA NKLGLHSLSK RCWLIQGTSA ISGQGLYEGL EWLSTTIPNK PERSTSVSSF RSDSYERKLV
201: RGPRY

Arabidopsis Description

ATARFB1AProbable ADP-ribosylation factor At2g15310 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHU5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.