Factsheet for Zm00001d017650_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015115_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	Zm00001d015115_P001	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85607	Sorghum	cytosol, mitochondrion	79.21	78.77
Zm00001d043113_P001	Maize	plastid	57.87	56.28
Zm00001d008295_P002	Maize	plastid	56.74	55.8
Zm00001d038533_P001	Maize	plastid	57.3	55.43
Zm00001d005231_P006	Maize	cytosol	57.3	54.84
PGSC0003DMT400064241	Potato	cytosol	52.81	51.93
PGSC0003DMT400075807	Potato	cytosol	52.81	51.93
PGSC0003DMT400064240	Potato	cytosol	49.44	51.76
Zm00001d019191_P007	Maize	peroxisome	57.3	51.26
Zm00001d023657_P001	Maize	cytosol	13.48	51.06
Zm00001d013007_P001	Maize	plastid	56.18	49.26
Solyc02g092970.2.1	Tomato	cytosol	52.25	48.69
AT2G15310.1	Thale cress	mitochondrion	50.0	43.41
Zm00001d030157_P001	Maize	extracellular	45.51	41.75
CDY48224	Canola	mitochondrion	47.19	40.98
Zm00001d051546_P001	Maize	cytosol	44.38	40.72
CDX71216	Canola	mitochondrion	47.19	40.19
Zm00001d012537_P003	Maize	cytosol	44.94	39.41
Zm00001d052978_P001	Maize	extracellular	40.45	39.13
Zm00001d015121_P002	Maize	mitochondrion	42.13	38.66
Zm00001d044868_P001	Maize	cytosol	40.45	38.1
Zm00001d017717_P001	Maize	cytosol	44.38	35.75
Zm00001d029408_P001	Maize	endoplasmic reticulum	29.21	25.74
Zm00001d033414_P001	Maize	extracellular	35.96	25.2
Zm00001d022172_P001	Maize	golgi, peroxisome	32.02	24.26
Bra036410.1-P	Field mustard	mitochondrion	47.19	20.0

Protein Annotations

EntrezGene:103627567	MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A1D6HG78	ProteinID:AQK73628.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF232
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI0004DEA44C	EnsemblPlantsGene:Zm00001d017650	EnsemblPlants:Zm00001d017650_P002	EnsemblPlants:Zm00001d017650_T002	SEG:seg

Description

Probable ADP-ribosylation factor

Coordinates

chr5:+:203139983..203141495

Molecular Weight (calculated)

19757.0 Da

IEP (calculated)

8.249

GRAVY (calculated)

-0.061

Length

178 amino acids

Sequence
(BLAST)

001: MGLAMGRLLG WKKEAQIALL GLGGAGKTAI LHKLKLGHAI TTGPTIGFNS ETLEYNGISF RVWDVGGQGE LRPLLRHYLY GVQGVVFVVD SSDREWILRA
101: KDLLNIILDE DQFRNRDLAL LVFANKQDRP NVMSAAEIAD EFGLPSRLCN RRWHIQSSSA ISGEGLHEGM AWLCTNIR

Best Arabidopsis Sequence Match ( AT2G47170.1 )
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.