Factsheet for Zm00001d051546_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07411	Sorghum	cytosol	97.42	97.42
TraesCS6A01G268000.1	Wheat	cytosol	93.81	95.29
TraesCS6D01G246900.1	Wheat	cytosol	93.3	94.76
Solyc06g072800.2.1	Tomato	cytosol	62.89	92.42
Solyc03g096910.2.1	Tomato	cytosol	62.37	91.67
VIT_16s0039g02240.t01	Wine grape	cytosol	89.69	90.16
PGSC0003DMT400069538	Potato	cytosol	87.63	88.08
Zm00001d030157_P001	Maize	extracellular	87.63	87.63
PGSC0003DMT400001454	Potato	cytosol	87.11	87.56
KRH77702	Soybean	cytosol	79.38	87.5
KRH27742	Soybean	cytosol	86.6	87.05
CDY43149	Canola	cytosol	84.54	85.42
CDY28739	Canola	cytosol	84.54	85.42
Bra032015.1-P	Field mustard	cytosol	84.54	85.42
GSMUA_Achr7P04780_001	Banana	cytosol	82.47	85.11
GSMUA_AchrUn_...	Banana	cytosol	81.44	84.95
AT5G17060.2	Thale cress	cytosol	84.02	84.9
AT3G03120.1	Thale cress	cytosol	83.51	84.38
CDY23463	Canola	cytosol	83.51	84.38
Bra021371.1-P	Field mustard	cytosol	83.51	84.38
Zm00001d017717_P001	Maize	cytosol	95.88	84.16
CDY16963	Canola	cytosol	82.99	83.85
CDX69406	Canola	cytosol	82.99	83.85
Bra008579.1-P	Field mustard	cytosol	82.47	83.33
KRH29023	Soybean	cytosol	82.99	82.56
KRH24049	Soybean	cytosol	82.47	82.05
Os02t0699300-01	Rice	cytosol, extracellular, plastid	48.45	75.81
Zm00001d015121_P002	Maize	mitochondrion	73.71	73.71
Zm00001d044868_P001	Maize	cytosol	66.49	68.25
HORVU6Hr1G067840.2	Barley	cytosol	94.33	65.59
TraesCS6B01G295200.1	Wheat	plastid	77.32	60.98
Zm00001d008295_P002	Maize	plastid	53.61	57.46
Zm00001d038533_P001	Maize	plastid	54.12	57.07
Zm00001d043113_P001	Maize	plastid	53.61	56.83
Zm00001d005231_P006	Maize	cytosol	54.12	56.45
Zm00001d019191_P007	Maize	peroxisome	54.12	52.76
Zm00001d013007_P001	Maize	plastid	53.61	51.23
Zm00001d023657_P001	Maize	cytosol	11.34	46.81
Zm00001d052978_P001	Maize	extracellular	43.3	45.65
Zm00001d017650_P002	Maize	cytosol	40.72	44.38
Zm00001d012537_P003	Maize	cytosol	45.88	43.84
Zm00001d033414_P001	Maize	extracellular	37.63	28.74
Zm00001d029408_P001	Maize	endoplasmic reticulum	29.9	28.71
Zm00001d022172_P001	Maize	golgi, peroxisome	32.47	26.81

Protein Annotations

EntrezGene:100284295	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:AQK54530.1	UniProt:B6TS42	EMBL:BT061945
EMBL:EU967807	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000182E5F2	EnsemblPlantsGene:Zm00001d051546	EnsemblPlants:Zm00001d051546_P001
EnsemblPlants:Zm00001d051546_T001	:	:	:	:	:

Description

ADP-ribosylation factor B1B

Coordinates

chr4:-:162063429..162066577

Molecular Weight (calculated)

21671.4 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.034

Length

194 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFLGTSEMRV VMLGLDAAGK TTILYKLQIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKAEFQAI INDPFMLNSV ILVFANKQDM KGAMTPMEVC EGLGLYDLKN RTWHIQGSCA LKGDGLYEGL DWMASTLKEL QASGRLPSGG TSLF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.