CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051546_P001	Maize	cytosol	97.42	97.42
TraesCS6A01G268000.1	Wheat	cytosol	94.85	96.34
TraesCS6D01G246900.1	Wheat	cytosol	94.33	95.81
Solyc06g072800.2.1	Tomato	cytosol	63.4	93.18
Solyc03g096910.2.1	Tomato	cytosol	62.89	92.42
VIT_16s0039g02240.t01	Wine grape	cytosol	90.72	91.19
PGSC0003DMT400069538	Potato	cytosol	88.66	89.12
EER94416	Sorghum	cytosol	88.66	88.66
PGSC0003DMT400001454	Potato	cytosol	88.14	88.6
KRH27742	Soybean	cytosol	87.63	88.08
KRH77702	Soybean	cytosol	79.9	88.07
Bra032015.1-P	Field mustard	cytosol	85.57	86.46
CDY28739	Canola	cytosol	85.57	86.46
CDY43149	Canola	cytosol	85.57	86.46
Zm00001d017717_P001	Maize	cytosol	98.45	86.43
AT5G17060.2	Thale cress	cytosol	85.05	85.94
GSMUA_Achr7P04780_001	Banana	cytosol	82.99	85.64
GSMUA_AchrUn_...	Banana	cytosol	81.96	85.48
CDY23463	Canola	cytosol	84.54	85.42
AT3G03120.1	Thale cress	cytosol	84.54	85.42
Bra021371.1-P	Field mustard	cytosol	84.54	85.42
CDY16963	Canola	cytosol	84.02	84.9
CDX69406	Canola	cytosol	84.02	84.9
Bra008579.1-P	Field mustard	cytosol	83.51	84.38
KRH29023	Soybean	cytosol	84.02	83.59
KRH24049	Soybean	cytosol	83.51	83.08
Os02t0699300-01	Rice	cytosol, extracellular, plastid	50.0	78.23
EES06219	Sorghum	mitochondrion	76.8	76.8
EER89435	Sorghum	cytosol	67.01	68.78
HORVU6Hr1G067840.2	Barley	cytosol	95.36	66.31
TraesCS6B01G295200.1	Wheat	plastid	77.84	61.38
EER96075	Sorghum	mitochondrion	55.15	59.12
EES19719	Sorghum	mitochondrion	54.64	58.56
EER93218	Sorghum	mitochondrion	54.64	58.56
EES14799	Sorghum	cytosol, mitochondrion	51.03	54.4
OQU85607	Sorghum	cytosol, mitochondrion	43.3	46.93
EES08754	Sorghum	cytosol, mitochondrion	44.33	46.74
OQU87737	Sorghum	cytosol	54.64	40.0
KXG37868	Sorghum	cytosol	38.14	40.0
OQU86657	Sorghum	peroxisome, plastid	54.64	34.53
EER99714	Sorghum	cytosol	32.99	31.53
EER94751	Sorghum	cytosol	30.93	29.7

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8073173	UniProt:C5Y0F1	EnsemblPlants:EES07411	ProteinID:EES07411
ProteinID:EES07411.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF183	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3004G271700	SUPFAM:SSF52540
unigene:Sbi.6176	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001A86202
RefSeq:XP_002454435.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:61554314..61557143

Molecular Weight (calculated)

21674.5 Da

IEP (calculated)

7.502

GRAVY (calculated)

0.005

Length

194 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFFGTSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKAEFQAI INDPLMLNSV ILVFANKQDM KGAMTPMEVC EGLGLYDLKN RIWHIQGSCA LKGDGLYEGL DWLASTLKEL QASGRLPSGG TSLF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.