CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24049	Soybean	cytosol	99.49	99.49
KRH27742	Soybean	cytosol	92.31	93.26
Solyc06g072800.2.1	Tomato	cytosol	62.56	92.42
KRH77702	Soybean	cytosol	83.08	92.05
Solyc03g096910.2.1	Tomato	cytosol	62.05	91.67
AT5G17060.2	Thale cress	cytosol	89.23	90.62
VIT_16s0039g02240.t01	Wine grape	cytosol	89.23	90.16
AT3G03120.1	Thale cress	cytosol	88.72	90.1
PGSC0003DMT400001454	Potato	cytosol	88.72	89.64
PGSC0003DMT400069538	Potato	cytosol	88.72	89.64
CDY23463	Canola	cytosol	88.21	89.58
CDX69406	Canola	cytosol	88.21	89.58
Bra032015.1-P	Field mustard	cytosol	88.21	89.58
Bra021371.1-P	Field mustard	cytosol	88.21	89.58
CDY16963	Canola	cytosol	88.21	89.58
CDY43149	Canola	cytosol	88.21	89.58
CDY28739	Canola	cytosol	88.21	89.58
Bra008579.1-P	Field mustard	cytosol	87.69	89.06
TraesCS6A01G268000.1	Wheat	cytosol	84.62	86.39
TraesCS6D01G246900.1	Wheat	cytosol	84.1	85.86
EES07411	Sorghum	cytosol	83.59	84.02
GSMUA_AchrUn_...	Banana	cytosol	80.0	83.87
Zm00001d051546_P001	Maize	cytosol	82.56	82.99
GSMUA_Achr7P04780_001	Banana	cytosol	80.0	82.98
Os02t0699300-01	Rice	cytosol, extracellular, plastid	47.18	74.19
Zm00001d017717_P001	Maize	cytosol	82.56	72.85
KRG93262	Soybean	nucleus	54.87	59.12
KRG99354	Soybean	mitochondrion	54.87	59.12
KRH69574	Soybean	endoplasmic reticulum, nucleus	54.87	59.12
KRG96566	Soybean	mitochondrion	54.87	59.12
KRH56584	Soybean	mitochondrion	54.87	59.12
KRH45651	Soybean	mitochondrion	54.87	59.12
KRG90489	Soybean	mitochondrion	54.87	59.12
HORVU6Hr1G067840.2	Barley	cytosol	84.1	58.78
KRH36902	Soybean	endoplasmic reticulum	55.38	58.7
KRH31758	Soybean	mitochondrion	55.38	58.7
KRH33780	Soybean	mitochondrion, peroxisome	54.36	58.56
KRH77051	Soybean	mitochondrion	54.36	58.24
TraesCS6B01G295200.1	Wheat	plastid	73.33	58.13
KRH74584	Soybean	nucleus	56.41	57.89
KRH02913	Soybean	cytosol	48.72	57.23
KRH18982	Soybean	endoplasmic reticulum	49.23	55.81
KRH07000	Soybean	extracellular, golgi	31.79	51.24
KRH69176	Soybean	endoplasmic reticulum	55.38	48.43
KRG92448	Soybean	endoplasmic reticulum	45.13	48.09
KRG92441	Soybean	endoplasmic reticulum	45.13	48.09
KRH34351	Soybean	endoplasmic reticulum	45.13	48.09
KRH34356	Soybean	cytosol, extracellular	32.31	45.32
KRH76824	Soybean	cytosol	39.49	41.62
KRH28677	Soybean	cytosol	39.49	41.62
KRH11380	Soybean	endoplasmic reticulum	30.77	29.41
KRH20906	Soybean	endoplasmic reticulum	30.77	29.41

Protein Annotations

EntrezGene:100499903	MapMan:22.3.2.1	Gene3D:3.40.50.300	EMBL:ACUP02006777	EMBL:BT090036	UniProt:C6SXY9
EnsemblPlantsGene:GLYMA_11G092300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	ProteinID:KRH29022.1	EnsemblPlants:KRH29023	ProteinID:KRH29023	ProteinID:KRH29023.1
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI0001B15587	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:7008063..7012159

Molecular Weight (calculated)

22048.7 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.109

Length

195 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNTEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRALWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQTI INDPFMLHSI ILVFANKQDL KGAMSPREIC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSTTLKER RAAGYSSIGL GTSSF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.