CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 24385303
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065739	Potato	mitochondrion	94.74	99.45
KRG99354	Soybean	mitochondrion	94.74	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	94.74	99.45
KRH45651	Soybean	mitochondrion	94.74	99.45
KRG90489	Soybean	mitochondrion	94.21	98.89
KRG96566	Soybean	mitochondrion	94.21	98.89
KRG93262	Soybean	nucleus	93.68	98.34
KRH56584	Soybean	mitochondrion	93.68	98.34
KRH33780	Soybean	mitochondrion, peroxisome	93.68	98.34
KRH31758	Soybean	mitochondrion	94.74	97.83
KRH36902	Soybean	endoplasmic reticulum	89.47	92.39
CDX69567	Canola	mitochondrion	94.21	86.89
Solyc01g008000.2.1	Tomato	plastid, unclear	94.21	85.65
KRH77051	Soybean	mitochondrion	81.05	84.62
CDY09875	Canola	mitochondrion	94.21	84.04
KRH69176	Soybean	endoplasmic reticulum	94.74	80.72
KRH07000	Soybean	extracellular, golgi	41.58	65.29
KRH18982	Soybean	endoplasmic reticulum	57.89	63.95
KRH02913	Soybean	cytosol	53.16	60.84
KRH77702	Soybean	cytosol	53.16	57.39
KRH27742	Soybean	cytosol	57.37	56.48
KRH29023	Soybean	cytosol	57.89	56.41
KRH24049	Soybean	cytosol	57.89	56.41
KRH34351	Soybean	endoplasmic reticulum	50.53	52.46
KRG92448	Soybean	endoplasmic reticulum	50.53	52.46
KRG92441	Soybean	endoplasmic reticulum	50.53	52.46
KRH34356	Soybean	cytosol, extracellular	36.32	49.64
KRH28677	Soybean	cytosol	45.26	46.49
KRH76824	Soybean	cytosol	45.26	46.49
KRH20906	Soybean	endoplasmic reticulum	35.26	32.84
KRH11380	Soybean	endoplasmic reticulum	35.26	32.84

Protein Annotations

EntrezGene:100306021	EntrezGene:100796123	EntrezGene:100807631	EntrezGene:100808042	MapMan:22.3.2.1	Gene3D:3.40.50.300
EMBL:ACUP02000049	EnsemblPlantsGene:GLYMA_01G029800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	UniProt:I1J584	InterPro:IPR024156	EnsemblPlants:KRH74584	ProteinID:KRH74584
ProteinID:KRH74584.1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00023BB060	:	:

Description

hypothetical protein

Coordinates

chr1:+:3148712..3151772

Molecular Weight (calculated)

21742.2 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.135

Length

190 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK VAIGFFPSLW

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.