Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92448 | Soybean | endoplasmic reticulum | 99.45 | 99.45 |
| KRG92441 | Soybean | endoplasmic reticulum | 98.91 | 98.91 |
| KRH34356 | Soybean | cytosol, extracellular | 71.04 | 93.53 |
| VIT_05s0020g04460.t01 | Wine grape | cytosol | 59.02 | 90.0 |
| AT3G22950.1 | Thale cress | cytosol | 89.62 | 89.62 |
| Solyc03g005300.2.1 | Tomato | cytosol | 89.07 | 89.07 |
| PGSC0003DMT400034971 | Potato | cytosol | 88.52 | 88.52 |
| Bra039725.1-P | Field mustard | cytosol | 87.98 | 87.98 |
| CDY53727 | Canola | cytosol | 87.98 | 87.98 |
| GSMUA_Achr4P01270_001 | Banana | endoplasmic reticulum | 87.98 | 87.98 |
| CDY16265 | Canola | cytosol | 86.89 | 86.89 |
| CDY36874 | Canola | cytosol | 86.89 | 86.89 |
| Bra036878.1-P | Field mustard | cytosol | 86.34 | 86.34 |
| CDY29751 | Canola | cytosol | 86.34 | 86.34 |
| GSMUA_Achr1P04710_001 | Banana | endoplasmic reticulum, extracellular | 85.79 | 85.79 |
| Os11t0586900-02 | Rice | cytosol | 84.15 | 83.7 |
| Zm00001d052978_P001 | Maize | extracellular | 81.97 | 81.52 |
| EES08754 | Sorghum | cytosol, mitochondrion | 81.97 | 81.52 |
| TraesCS4D01G152600.1 | Wheat | cytosol | 81.42 | 80.98 |
| HORVU4Hr1G038090.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 80.87 | 80.43 |
| TraesCS4B01G164400.1 | Wheat | endoplasmic reticulum | 80.87 | 80.43 |
| TraesCS4A01G149200.1 | Wheat | cytosol | 80.87 | 80.43 |
| KRH56584 | Soybean | mitochondrion | 53.01 | 53.59 |
| KRG90489 | Soybean | mitochondrion | 53.01 | 53.59 |
| KRG93262 | Soybean | nucleus | 53.01 | 53.59 |
| KRG96566 | Soybean | mitochondrion | 53.01 | 53.59 |
| KRH69574 | Soybean | endoplasmic reticulum, nucleus | 53.01 | 53.59 |
| KRH45651 | Soybean | mitochondrion | 53.01 | 53.59 |
| KRH33780 | Soybean | mitochondrion, peroxisome | 53.01 | 53.59 |
| KRG99354 | Soybean | mitochondrion | 53.01 | 53.59 |
| KRH36902 | Soybean | endoplasmic reticulum | 53.01 | 52.72 |
| KRH31758 | Soybean | mitochondrion | 52.46 | 52.17 |
| KRH77051 | Soybean | mitochondrion | 50.82 | 51.1 |
| KRH18982 | Soybean | endoplasmic reticulum | 47.54 | 50.58 |
| KRH74584 | Soybean | nucleus | 52.46 | 50.53 |
| KRH77702 | Soybean | cytosol | 45.36 | 47.16 |
| KRH02913 | Soybean | cytosol | 42.62 | 46.99 |
| KRH29023 | Soybean | cytosol | 48.09 | 45.13 |
| KRH24049 | Soybean | cytosol | 48.09 | 45.13 |
| KRH27742 | Soybean | cytosol | 47.54 | 45.08 |
| KRH69176 | Soybean | endoplasmic reticulum | 52.46 | 43.05 |
| KRH07000 | Soybean | extracellular, golgi | 25.14 | 38.02 |
| KRH76824 | Soybean | cytosol | 38.25 | 37.84 |
| KRH28677 | Soybean | cytosol | 38.25 | 37.84 |
| KRH20906 | Soybean | endoplasmic reticulum | 34.43 | 30.88 |
| KRH11380 | Soybean | endoplasmic reticulum | 34.43 | 30.88 |
Protein Annotations
| EntrezGene:100526848 | MapMan:22.3.2.1 | Gene3D:3.40.50.300 | EMBL:ACUP02006591 | EMBL:BT091647 | UniProt:C6T2I8 |
| EnsemblPlantsGene:GLYMA_10G178500 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:IPR024156 | EnsemblPlants:KRH34351 | ProteinID:KRH34351 | ProteinID:KRH34351.1 | ProteinID:KRH34352.1 |
| InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF290 |
| SMART:SM00175 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF |
| InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 | UniParc:UPI0001B150FA | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:+:41178063..41180938
Molecular Weight (calculated)
20539.7 Da
IEP (calculated)
6.628
GRAVY (calculated)
-0.062
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAMMSRFWF MLFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTNPTVG SNVEELVYKN IRFEVWDLGG QERLRTSWAT YYRGTHAVIA VIDSSDRARI
101: SIIKDELFRL LGHEDLQHSV ILVFANKQDI KDAMTPAEIT DALSLHSIKD HDWHIQACCA LSGEGLYDGL GWIAQRVTGK APT
101: SIIKDELFRL LGHEDLQHSV ILVFANKQDI KDAMTPAEIT DALSLHSIKD HDWHIQACCA LSGEGLYDGL GWIAQRVTGK APT
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
Arabidopsis Description
ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.