Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34356 | Soybean | cytosol, extracellular | 70.83 | 61.15 |
| KRG92448 | Soybean | endoplasmic reticulum | 90.83 | 59.56 |
| KRG92441 | Soybean | endoplasmic reticulum | 90.0 | 59.02 |
| KRH34351 | Soybean | endoplasmic reticulum | 90.0 | 59.02 |
| AT3G22950.1 | Thale cress | cytosol | 88.33 | 57.92 |
| Solyc03g005300.2.1 | Tomato | cytosol | 88.33 | 57.92 |
| PGSC0003DMT400034971 | Potato | cytosol | 87.5 | 57.38 |
| Bra039725.1-P | Field mustard | cytosol | 85.83 | 56.28 |
| CDY53727 | Canola | cytosol | 85.83 | 56.28 |
| CDY16265 | Canola | cytosol | 85.0 | 55.74 |
| Zm00001d052978_P001 | Maize | extracellular | 85.0 | 55.43 |
| EES08754 | Sorghum | cytosol, mitochondrion | 85.0 | 55.43 |
| Os11t0586900-02 | Rice | cytosol | 85.0 | 55.43 |
| Bra036878.1-P | Field mustard | cytosol | 84.17 | 55.19 |
| GSMUA_Achr4P01270_001 | Banana | endoplasmic reticulum | 84.17 | 55.19 |
| CDY29751 | Canola | cytosol | 84.17 | 55.19 |
| CDY36874 | Canola | cytosol | 84.17 | 55.19 |
| GSMUA_Achr1P04710_001 | Banana | endoplasmic reticulum, extracellular | 84.17 | 55.19 |
| TraesCS4A01G149200.1 | Wheat | cytosol | 82.5 | 53.8 |
| TraesCS4B01G164400.1 | Wheat | endoplasmic reticulum | 82.5 | 53.8 |
| TraesCS4D01G152600.1 | Wheat | cytosol | 82.5 | 53.8 |
| HORVU4Hr1G038090.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 81.67 | 53.26 |
| VIT_14s0066g01080.t01 | Wine grape | mitochondrion | 50.0 | 33.15 |
| VIT_05s0020g00490.t01 | Wine grape | cytosol | 49.17 | 31.89 |
| VIT_16s0039g02240.t01 | Wine grape | cytosol | 49.17 | 30.57 |
| VIT_01s0127g00440.t01 | Wine grape | cytosol, mitochondrion | 49.17 | 30.1 |
| VIT_04s0008g07360.t01 | Wine grape | cytosol, mitochondrion | 44.17 | 29.28 |
| VIT_04s0023g01820.t01 | Wine grape | cytosol | 40.83 | 26.49 |
| VIT_07s0129g01090.t01 | Wine grape | mitochondrion | 41.67 | 25.25 |
| VIT_11s0052g01720.t01 | Wine grape | cytosol, mitochondrion | 43.33 | 23.42 |
| VIT_00s0189g00080.t01 | Wine grape | cytosol | 27.5 | 22.15 |
| VIT_07s0005g02000.t01 | Wine grape | cytosol | 49.17 | 21.53 |
| VIT_19s0027g00160.t01 | Wine grape | cytosol, extracellular | 22.5 | 20.61 |
| VIT_00s0215g00070.t01 | Wine grape | endoplasmic reticulum | 35.0 | 20.49 |
| VIT_14s0060g00690.t01 | Wine grape | golgi | 49.17 | 17.15 |
| VIT_00s2604g00010.t01 | Wine grape | extracellular | 8.33 | 10.0 |
Protein Annotations
| EntrezGene:100261292 | wikigene:100261292 | MapMan:22.3.2.1 | Gene3D:3.40.50.300 | ProteinID:CCB50480 | ProteinID:CCB50480.1 |
| UniProt:F6HDV9 | EMBL:FN595749 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | InterPro:IPR024156 | EntrezGene:LOC100261292 |
| wikigene:LOC100261292 | InterPro:P-loop_NTPase | PFAM:PF00025 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF290 |
| SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | UniParc:UPI0002107F32 | ArrayExpress:VIT_05s0020g04460 |
| EnsemblPlantsGene:VIT_05s0020g04460 | EnsemblPlants:VIT_05s0020g04460.t01 | RefSeq:XP_002283837 | RefSeq:XP_002283837.1 | : | : |
Description
No Description!
Coordinates
chr5:-:6257694..6259155
Molecular Weight (calculated)
13495.1 Da
IEP (calculated)
6.339
GRAVY (calculated)
-0.166
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MVWDLGGQER LRTSWATYYR GTHAVIVVID STDRARITIM KDELFRLLQH DDLQNSVILV FANKQDIKDA MTPAEITDAL SLHSIKNHDW HIQACCALTG
101: DGLYDGLGWI AQRVTGKAPS
101: DGLYDGLGWI AQRVTGKAPS
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
Arabidopsis Description
ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.