Factsheet for VIT_14s0060g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005190.2.1	Tomato	nucleus	52.33	99.45
EES19719	Sorghum	mitochondrion	52.03	98.89
Os05t0489600-03	Rice	plasma membrane	52.03	98.89
TraesCS3B01G368600.1	Wheat	mitochondrion	52.03	98.89
Os01t0813400-01	Rice	plasma membrane	51.74	98.34
VIT_05s0020g00490.t01	Wine grape	cytosol	52.62	97.84
TraesCS3A01G337300.1	Wheat	mitochondrion	51.74	97.8
VIT_14s0066g01080.t01	Wine grape	mitochondrion	51.45	97.79
Zm00001d038533_P001	Maize	plastid	51.74	96.74
TraesCS1B01G317000.1	Wheat	mitochondrion	51.74	96.74
TraesCS1A01G306200.1	Wheat	mitochondrion	51.74	95.7
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	52.03	91.33
HORVU1Hr1G068790.1	Barley	plastid	54.07	78.81
HORVU0Hr1G027130.1	Barley	plasma membrane	54.65	74.02
VIT_07s0005g02000.t01	Wine grape	cytosol	58.43	73.36
TraesCS3D01G330500.1	Wheat	cytosol	52.91	72.51
TraesCS1D01G305900.1	Wheat	golgi	54.94	71.86
VIT_07s0129g01090.t01	Wine grape	mitochondrion	40.41	70.2
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	31.98	60.77
HORVU3Hr1G079700.1	Barley	cytosol	54.07	59.81
VIT_16s0039g02240.t01	Wine grape	cytosol	30.23	53.89
VIT_05s0020g04460.t01	Wine grape	cytosol	17.15	49.17
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	31.1	48.2
VIT_04s0023g01820.t01	Wine grape	cytosol	25.29	47.03
VIT_00s2604g00010.t01	Wine grape	extracellular	10.76	37.0
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	18.9	31.71
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	10.76	28.24
VIT_00s0189g00080.t01	Wine grape	cytosol	10.47	24.16

Protein Annotations

EntrezGene:100242458	wikigene:100242458	EntrezGene:100242677	wikigene:100242677	EntrezGene:100267487	wikigene:100267487
MapMan:22.3.2.1	MapMan:24.2.1.5	Gene3D:3.40.50.300	ProteinID:CCB61940	ProteinID:CCB61940.1	ncoils:Coil
UniProt:F6I4V3	EMBL:FN596746	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024156	EntrezGene:LOC100242458
wikigene:LOC100242458	EntrezGene:LOC100242677	wikigene:LOC100242677	EntrezGene:LOC100267487	wikigene:LOC100267487	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGR:TC51848	TIGRFAMs:TIGR00231	TMHMM:TMhelix	UniParc:UPI000210A8A9	ArrayExpress:VIT_14s0060g00690	EnsemblPlantsGene:VIT_14s0060g00690
EnsemblPlants:VIT_14s0060g00690.t01	RefSeq:XP_002279216	RefSeq:XP_002279216.1	RefSeq:XP_002281047	RefSeq:XP_002281047.1	SEG:seg

Description

No Description!

Coordinates

chr14:+:593133..600665

Molecular Weight (calculated)

39329.9 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.074

Length

344 amino acids

Sequence
(BLAST)

001: MGGDYLPFLA MFLVQMGYAG MNIFVKLAMD SGMNPFILVA YRQIFATVAM IPFAYFLESV VGSLFVVLGL YAVLWGKGKE ENQRGSREEA EEGKEDLELQ
101: INGKLYIRKD PNPDQRRLNV RHIRPSINAR VSYQFLLLSF GQLLEICPLR FPKLLFCPYQ TQNMGLSFTK LFSRLFAKKE MRILMVGLDA AGKTTILYKL
201: KLGEIVTTIP TIGFNVETVE YKNISFTVWD VGGQDKIRPL WRHYFQNTQG LIFVVDSNDR DRVVEARDEL HRMLNEDELR DAVLLVFANK QDLPNAMNAA
301: EITDKLGLHS LRQRHWYIQS TCATSGEGLY EGLDWLSNNI ANKA

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.