Factsheet for Zm00001d038533_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 21190064

plastid: 22065420
plastid: 23198870

gfp PMID: 21190064 doi

IC Moraes, I Lermontova, I Schubert

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Gatersleben, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Gatersleben, Germany. Izabel_moraes@yahoo.com

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005190.2.1	Tomato	nucleus	97.28	98.89
KRG99354	Soybean	mitochondrion	97.28	98.89
KRH45651	Soybean	mitochondrion	97.28	98.89
KRH69574	Soybean	endoplasmic reticulum, nucleus	97.28	98.89
Os01t0813400-01	Rice	plasma membrane	97.28	98.89
PGSC0003DMT400035158	Potato	mitochondrion	97.28	98.89
TraesCS3A01G337300.1	Wheat	mitochondrion	97.28	98.35
KRG90489	Soybean	mitochondrion	96.74	98.34
PGSC0003DMT400042276	Potato	mitochondrion	96.74	98.34
KRG96566	Soybean	mitochondrion	96.74	98.34
KRH33780	Soybean	mitochondrion, peroxisome	96.2	97.79
TraesCS1B01G317000.1	Wheat	mitochondrion	97.28	97.28
Zm00001d008295_P002	Maize	plastid	95.65	97.24
TraesCS1A01G306200.1	Wheat	mitochondrion	97.83	96.77
Zm00001d043113_P001	Maize	plastid	96.2	96.72
VIT_05s0020g00490.t01	Wine grape	cytosol	96.74	96.22
Bra008746.1-P	Field mustard	mitochondrion	96.2	93.65
Zm00001d023657_P001	Maize	cytosol	23.91	93.62
Zm00001d005231_P006	Maize	cytosol	94.02	93.01
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	96.74	90.82
Zm00001d019191_P007	Maize	peroxisome	94.57	87.44
Zm00001d013007_P001	Maize	plastid	95.11	86.21
TraesCS3D01G330500.1	Wheat	cytosol	97.28	71.31
Zm00001d012537_P003	Maize	cytosol	74.46	67.49
VIT_07s0005g02000.t01	Wine grape	cytosol	96.74	64.96
Zm00001d017650_P002	Maize	cytosol	55.43	57.3
Zm00001d030157_P001	Maize	extracellular	59.78	56.7
Zm00001d051546_P001	Maize	cytosol	57.07	54.12
VIT_14s0060g00690.t01	Wine grape	golgi	96.74	51.74
Zm00001d052978_P001	Maize	extracellular	51.09	51.09
Zm00001d015121_P002	Maize	mitochondrion	53.8	51.03
Zm00001d044868_P001	Maize	cytosol	50.0	48.68
Zm00001d017717_P001	Maize	cytosol	57.07	47.51
Zm00001d033414_P001	Maize	extracellular	48.37	35.04
Zm00001d029408_P001	Maize	endoplasmic reticulum	34.78	31.68
Zm00001d022172_P001	Maize	golgi, peroxisome	34.78	27.23

Protein Annotations

EntrezGene:100384428	MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:542500	ProteinID:AQK86854.1	ProteinID:AQK86863.1
EMBL:BT070092	UniProt:C0PP73	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006471	GO:GO:0006810
GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016192	GO:GO:0019538	InterPro:IPR024156	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI000195D531	EnsemblPlantsGene:Zm00001d038533	EnsemblPlants:Zm00001d038533_P001	EnsemblPlants:Zm00001d038533_T001	:

Description

centromeric histone H3 centromeric histone H3

Coordinates

chr6:-:159380616..159390151

Molecular Weight (calculated)

21134.5 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.242

Length

184 amino acids

Sequence
(BLAST)

001: MGLTFTKLFR RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK ARSI

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.