Factsheet for Zm00001d008295_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32180_001	Banana	cytosol	74.03	98.53
GSMUA_Achr10P...	Banana	cytosol	85.08	96.25
GSMUA_Achr4P10250_001	Banana	mitochondrion	96.13	96.13
Zm00001d023657_P001	Maize	cytosol	24.86	95.74
Zm00001d038533_P001	Maize	plastid	97.24	95.65
Zm00001d043113_P001	Maize	plastid	96.13	95.08
GSMUA_Achr4P02310_001	Banana	mitochondrion	94.48	94.48
Zm00001d005231_P006	Maize	cytosol	96.13	93.55
TraesCS5A01G142100.1	Wheat	cytosol	92.27	92.27
TraesCS5B01G140900.1	Wheat	cytosol	92.27	92.27
TraesCS5D01G150000.1	Wheat	cytosol	92.27	91.26
Zm00001d019191_P007	Maize	peroxisome	96.69	87.94
Zm00001d013007_P001	Maize	plastid	97.24	86.7
HORVU5Hr1G045440.2	Barley	cytosol, plastid	92.27	66.27
Zm00001d012537_P003	Maize	cytosol	74.03	66.01
Zm00001d017650_P002	Maize	cytosol	55.8	56.74
Zm00001d030157_P001	Maize	extracellular	59.12	55.15
Zm00001d051546_P001	Maize	cytosol	57.46	53.61
Zm00001d052978_P001	Maize	extracellular	53.04	52.17
Zm00001d015121_P002	Maize	mitochondrion	53.59	50.0
Zm00001d044868_P001	Maize	cytosol	51.38	49.21
Zm00001d017717_P001	Maize	cytosol	57.46	47.06
Zm00001d033414_P001	Maize	extracellular	49.17	35.04
Zm00001d029408_P001	Maize	endoplasmic reticulum	35.36	31.68
Zm00001d022172_P001	Maize	golgi, peroxisome	36.46	28.09

Protein Annotations

EntrezGene:100216623	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:AQK89417.1	ProteinID:AQK89418.1	ProteinID:AQK89420.1
UniProt:B4FIX8	EMBL:BT037066	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00017B713A
EnsemblPlantsGene:Zm00001d008295	EnsemblPlants:Zm00001d008295_P002	EnsemblPlants:Zm00001d008295_T002	:	:	:

Description

ADP-ribosylation factor A1B

Coordinates

chr8:+:4446925..4452996

Molecular Weight (calculated)

20696.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.232

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFSKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEAKDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TTGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.