Factsheet for Zm00001d043113_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100860.2.1	Tomato	unclear	97.81	98.89
Bra021387.1-P	Field mustard	cytosol	96.72	97.79
GSMUA_Achr5P07760_001	Banana	mitochondrion	96.17	97.24
Zm00001d038533_P001	Maize	plastid	96.72	96.2
Zm00001d008295_P002	Maize	plastid	95.08	96.13
Zm00001d005231_P006	Maize	cytosol	95.63	94.09
CDX95712	Canola	cytosol	97.27	93.68
Zm00001d023657_P001	Maize	cytosol	24.04	93.62
CDX83340	Canola	cytosol	96.72	92.67
Bra000443.1-P	Field mustard	cytosol	96.17	91.67
Zm00001d019191_P007	Maize	peroxisome	95.63	87.94
Zm00001d013007_P001	Maize	plastid	95.08	85.71
Zm00001d012537_P003	Maize	cytosol	76.5	68.97
OQU87737	Sorghum	cytosol	98.36	67.92
Zm00001d017650_P002	Maize	cytosol	56.28	57.87
Zm00001d030157_P001	Maize	extracellular	59.56	56.19
Zm00001d051546_P001	Maize	cytosol	56.83	53.61
Zm00001d052978_P001	Maize	extracellular	50.82	50.54
Zm00001d015121_P002	Maize	mitochondrion	53.55	50.52
Zm00001d044868_P001	Maize	cytosol	50.82	49.21
Zm00001d017717_P001	Maize	cytosol	56.83	47.06
Zm00001d033414_P001	Maize	extracellular	49.18	35.43
Zm00001d029408_P001	Maize	endoplasmic reticulum	34.43	31.19
Zm00001d022172_P001	Maize	golgi, peroxisome	34.97	27.23

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A1D6N919	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	ProteinID:ONM37040.1	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI0008449199	EnsemblPlantsGene:Zm00001d043113	EnsemblPlants:Zm00001d043113_P001	EnsemblPlants:Zm00001d043113_T001	:

Description

ADP-ribosylation factor A1E

Coordinates

chr3:-:189507576..189509910

Molecular Weight (calculated)

20952.4 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.218

Length

183 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK MLK

Best Arabidopsis Sequence Match ( AT3G62290.2 )
(BLAST)

001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Arabidopsis Description

ARFA1EADP-ribosylation factor A1E [Source:UniProtKB/TrEMBL;Acc:Q9M1P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.