Factsheet for Solyc01g100860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 4
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021387.1-P	Field mustard	cytosol	98.34	98.34
Solyc05g005190.2.1	Tomato	nucleus	98.34	98.34
Zm00001d043113_P001	Maize	plastid	98.89	97.81
GSMUA_Achr5P07760_001	Banana	mitochondrion	97.79	97.79
CDX95712	Canola	cytosol	98.89	94.21
CDX83340	Canola	cytosol	98.34	93.19
Bra000443.1-P	Field mustard	cytosol	97.79	92.19
Solyc01g008000.2.1	Tomato	plastid, unclear	97.79	84.69
Solyc02g092970.2.1	Tomato	cytosol	86.19	81.68
Solyc01g100870.2.1	Tomato	plastid	87.29	75.24
OQU87737	Sorghum	cytosol	98.89	67.55
Solyc06g072800.2.1	Tomato	cytosol	45.3	62.12
Solyc03g096910.2.1	Tomato	cytosol	44.75	61.36
Solyc07g006640.2.1	Tomato	plastid	61.33	60.99
Solyc12g099080.1.1	Tomato	unclear	73.48	59.64
Solyc04g025560.2.1	Tomato	unclear	76.8	54.94
Solyc03g005300.2.1	Tomato	cytosol	51.93	51.37
Solyc07g014650.2.1	Tomato	cytosol	44.2	47.34
Solyc10g074630.1.1	Tomato	cytosol	32.6	30.57

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4B1B7	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc01g100860.2
EnsemblPlants:Solyc01g100860.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00005BA44D	:	:	:

Description

No Description!

Coordinates

chr1:-:90764062..90773122

Molecular Weight (calculated)

20622.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.233

Length

181 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK G

Best Arabidopsis Sequence Match ( AT3G62290.2 )
(BLAST)

001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Arabidopsis Description

ARFA1EADP-ribosylation factor A1E [Source:UniProtKB/TrEMBL;Acc:Q9M1P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.