Factsheet for Solyc07g006640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
mitochondrion 3
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082840.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24765.1	Solyc02g082840.2.1	AT5G66030.1	16236155
AT2G24765.1	Solyc02g082840.2.1	AT5G66030.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18982	Soybean	endoplasmic reticulum	91.21	96.51
KRH02913	Soybean	cytosol	87.91	96.39
EES14799	Sorghum	cytosol, mitochondrion	93.96	93.96
Bra007833.1-P	Field mustard	cytosol	93.41	93.41
CDY45596	Canola	cytosol	93.41	93.41
CDY34756	Canola	cytosol	93.41	93.41
CDX76793	Canola	cytosol	93.41	93.41
CDX75192	Canola	cytosol	93.41	93.41
CDX68781	Canola	cytosol	93.41	93.41
Bra032062.1-P	Field mustard	cytosol	93.41	93.41
Bra011295.1-P	Field mustard	cytosol	93.41	93.41
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.86	92.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.86	92.86
Os08t0248900-01	Rice	nucleus, plasma membrane	92.86	92.86
AT2G24765.1	Thale cress	cytosol	92.86	92.86
HORVU7Hr1G061220.1	Barley	cytosol, mitochondrion	92.31	92.31
CDY36172	Canola	cytosol	90.11	90.11
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	92.86	85.35
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	92.86	85.35
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	92.31	84.85
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	90.11	73.87
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	91.76	65.75
Solyc01g100860.2.1	Tomato	unclear	60.99	61.33
Solyc05g005190.2.1	Tomato	nucleus	60.44	60.77
Solyc06g072800.2.1	Tomato	cytosol	42.31	58.33
Solyc03g096910.2.1	Tomato	cytosol	41.76	57.58
Solyc02g092970.2.1	Tomato	cytosol	55.49	52.88
Solyc01g008000.2.1	Tomato	plastid, unclear	59.89	52.15
Solyc03g005300.2.1	Tomato	cytosol	48.9	48.63
Solyc01g100870.2.1	Tomato	plastid	54.4	47.14
Solyc07g014650.2.1	Tomato	cytosol	41.21	44.38
Solyc12g099080.1.1	Tomato	unclear	43.96	35.87
Solyc10g074630.1.1	Tomato	cytosol	35.16	33.16
Solyc04g025560.2.1	Tomato	unclear	45.05	32.41

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4CBD5	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF41	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc07g006640.2	EnsemblPlants:Solyc07g006640.2.1
TIGRFAMs:TIGR00231	UniParc:UPI000276C7A1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:1506417..1517122

Molecular Weight (calculated)

20265.3 Da

IEP (calculated)

5.020

GRAVY (calculated)

0.005

Length

182 amino acids

Sequence
(BLAST)

001: MGLVFSRLFS SLFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAIIY VVDSSDTDRL
101: VVAKEEFHAI LEEEELKGAV VLIYANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTSA IKGEGLFEGL DWLSNTLKSG GG

Best Arabidopsis Sequence Match ( AT2G24765.1 )
(BLAST)

001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG

Arabidopsis Description

ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.