Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G234700.2 | |
| TraesCS2B01G259500.1 | |
| TraesCS2D01G238300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G282400.1 | Wheat | cytosol, mitochondrion | 99.49 | 99.49 |
| TraesCS7B01G181400.1 | Wheat | cytosol, mitochondrion | 98.99 | 98.99 |
| HORVU7Hr1G061220.1 | Barley | cytosol, mitochondrion | 90.91 | 98.9 |
| Os08t0248900-01 | Rice | nucleus, plasma membrane | 89.39 | 97.25 |
| EES14799 | Sorghum | cytosol, mitochondrion | 89.39 | 97.25 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 85.35 | 92.86 |
| Solyc07g006640.2.1 | Tomato | plastid | 84.85 | 92.31 |
| KRH02913 | Soybean | cytosol | 77.27 | 92.17 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 84.34 | 91.76 |
| KRH18982 | Soybean | endoplasmic reticulum | 79.29 | 91.28 |
| VIT_04s0008g07360.t01 | Wine grape | cytosol, mitochondrion | 82.32 | 90.06 |
| AT2G24765.1 | Thale cress | cytosol | 82.32 | 89.56 |
| Bra007833.1-P | Field mustard | cytosol | 81.82 | 89.01 |
| CDY34756 | Canola | cytosol | 81.82 | 89.01 |
| CDX76793 | Canola | cytosol | 81.82 | 89.01 |
| CDY45596 | Canola | cytosol | 81.82 | 89.01 |
| CDX75192 | Canola | cytosol | 81.82 | 89.01 |
| Bra011295.1-P | Field mustard | cytosol | 81.82 | 89.01 |
| Bra032062.1-P | Field mustard | cytosol | 81.82 | 89.01 |
| CDX68781 | Canola | cytosol | 81.82 | 89.01 |
| CDY36172 | Canola | cytosol | 79.29 | 86.26 |
| VIT_11s0052g01720.t01 | Wine grape | cytosol, mitochondrion | 80.81 | 72.07 |
| PGSC0003DMT400070636 | Potato | cytosol, mitochondrion | 78.28 | 61.02 |
| TraesCS2A01G235500.1 | Wheat | golgi, plastid | 55.56 | 60.77 |
| TraesCS3A01G337300.1 | Wheat | mitochondrion | 55.56 | 60.44 |
| TraesCS5A01G142100.1 | Wheat | cytosol | 54.55 | 59.67 |
| TraesCS1A01G306200.1 | Wheat | mitochondrion | 55.56 | 59.14 |
| TraesCS5A01G467400.1 | Wheat | cytosol | 56.06 | 52.61 |
| TraesCS6A01G268000.1 | Wheat | cytosol | 49.49 | 51.31 |
| TraesCS1A01G197800.1 | Wheat | golgi | 48.99 | 50.79 |
| TraesCS4A01G149200.1 | Wheat | cytosol | 42.42 | 45.65 |
| TraesCS6A01G086900.2 | Wheat | cytosol | 43.43 | 42.57 |
| TraesCS5A01G014900.1 | Wheat | cytosol | 38.38 | 41.08 |
| TraesCS1A01G421700.1 | Wheat | cytosol | 37.88 | 38.07 |
| TraesCS4A01G292900.1 | Wheat | cytosol | 21.21 | 33.6 |
| TraesCS1A01G069400.1 | Wheat | peroxisome | 32.83 | 32.02 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005795 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0046686 | InterPro:IPR024156 | InterPro:P-loop_NTPase |
| PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF41 | SMART:SM00177 |
| SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 |
| EnsemblPlantsGene:TraesCS7A01G284000 | EnsemblPlants:TraesCS7A01G284000.3 | TIGR:cd04151 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:319587234..319598812
Molecular Weight (calculated)
22290.8 Da
IEP (calculated)
5.816
GRAVY (calculated)
-0.015
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVFTRLFS SVFGNREARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRYILYS EYPYPKSVIM MPYWRCYFPN
101: TQAIIYVVDS SDTDRLVTAK EEFHSILEED ELKGAVVLVY ANKQDLPGAL NDAAITESLE LHKIKSRQWA IFKTSAIKGE GLFEGLNWLS NALKSGGS
101: TQAIIYVVDS SDTDRLVTAK EEFHSILEED ELKGAVVLVY ANKQDLPGAL NDAAITESLE LHKIKSRQWA IFKTSAIKGE GLFEGLNWLS NALKSGGS
001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQKP WSCIR
101: GVAKEEFHAI LEEDELKGAV VLIFANKQKP WSCIR
Arabidopsis Description
ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.