Factsheet for Os08t0248900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0472500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24765.1	Os07t0472500-01	AT5G66030.1	16236155
AT2G24765.1	Os07t0472500-01	AT5G66030.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14799	Sorghum	cytosol, mitochondrion	98.9	98.9
HORVU7Hr1G061220.1	Barley	cytosol, mitochondrion	98.35	98.35
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.41	93.41
KRH18982	Soybean	endoplasmic reticulum	87.91	93.02
Solyc07g006640.2.1	Tomato	plastid	92.86	92.86
KRH02913	Soybean	cytosol	84.62	92.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.31	92.31
AT2G24765.1	Thale cress	cytosol	91.21	91.21
CDX76793	Canola	cytosol	90.66	90.66
CDY34756	Canola	cytosol	90.66	90.66
CDY45596	Canola	cytosol	90.66	90.66
Bra032062.1-P	Field mustard	cytosol	90.66	90.66
Bra007833.1-P	Field mustard	cytosol	90.66	90.66
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	90.11	90.61
Bra011295.1-P	Field mustard	cytosol	90.11	90.11
CDX75192	Canola	cytosol	90.11	90.11
CDX68781	Canola	cytosol	90.11	90.11
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	97.8	89.9
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	97.8	89.9
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	97.25	89.39
CDY36172	Canola	cytosol	87.36	87.36
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	89.56	73.42
Os03t0811900-01	Rice	plasma membrane	61.54	61.88
Os01t0813400-01	Rice	plasma membrane	61.54	61.88
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	86.26	61.81
Os05t0489600-03	Rice	plasma membrane	60.99	61.33
Os07t0223100-01	Rice	plasma membrane	60.99	61.33
Os07t0223400-01	Rice	mitochondrion	60.99	61.33
Os01t0265100-01	Rice	plasma membrane, plastid	60.99	61.33
Os10t0580200-01	Rice	plasma membrane	53.85	51.04
Os02t0699300-01	Rice	cytosol, extracellular, plastid	34.07	50.0
Os02t0128600-01	Rice	mitochondrion	52.2	48.97
Os06t0114200-00	Rice	plasma membrane	50.55	48.68
Os11t0586900-02	Rice	cytosol	48.9	48.37
Os02t0327100-01	Rice	cytosol	42.86	42.16
Os03t0392300-01	Rice	cytosol	35.16	31.53
Os07t0620400-01	Rice	cytosol	33.52	30.05

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:4345072	EMBL:AK073613	ProteinID:BAD05682.1	ProteinID:BAD05839.1
ProteinID:BAF23282.1	ProteinID:BAT04547.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005795
GO:GO:0005886	GO:GO:0008150	GO:GO:0016020	GO:GO:0046686	InterPro:IPR024156	EnsemblPlantsGene:Os08g0248900
EnsemblPlants:Os08t0248900-01	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF41	UniProt:Q6YW27	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000022F2D2	RefSeq:XP_015650680.1	:

Description

AUXIN RESPONSE FACTOR 3Similar to ADP-ribosylation factor 3. (Os08t0248900-01)

Coordinates

chr8:+:9081566..9086469

Molecular Weight (calculated)

20398.4 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.042

Length

182 amino acids

Sequence
(BLAST)

001: MGIVFTRLFS SVFGNREARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAIIY VVDSSDTDRL
101: VTAKEEFHAI LEEDELKGAV VLVYANKQDL PGALDDAAIT ESLELHKIKS RQWAIFKTSA IKGEGLFEGL DWLSNALKSK SS

Best Arabidopsis Sequence Match ( AT2G24765.1 )
(BLAST)

001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG

Arabidopsis Description

ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.