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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 5
  • peroxisome 1
  • endoplasmic reticulum 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, golgi, mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:endoplasmic reticulum, golgi
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os05t0489600-03 Rice plasma membrane 99.45 99.45
KRG99354 Soybean mitochondrion 98.89 98.89
KRH45651 Soybean mitochondrion 98.89 98.89
KRH69574 Soybean endoplasmic reticulum, nucleus 98.89 98.89
Solyc05g005190.2.1 Tomato nucleus 98.89 98.89
PGSC0003DMT400035158 Potato mitochondrion 98.89 98.89
TraesCS3A01G337300.1 Wheat mitochondrion 98.89 98.35
KRG90489 Soybean mitochondrion 98.34 98.34
KRG96566 Soybean mitochondrion 98.34 98.34
PGSC0003DMT400042276 Potato mitochondrion 98.34 98.34
Os03t0811900-01 Rice plasma membrane 98.34 98.34
KRH33780 Soybean mitochondrion, peroxisome 97.79 97.79
Zm00001d038533_P001 Maize plastid 98.89 97.28
TraesCS1B01G317000.1 Wheat mitochondrion 98.89 97.28
Os07t0223100-01 Rice plasma membrane 97.24 97.24
Os07t0223400-01 Rice mitochondrion 97.24 97.24
Os01t0265100-01 Rice plasma membrane, plastid 97.24 97.24
TraesCS1A01G306200.1 Wheat mitochondrion 98.89 96.24
VIT_05s0020g00490.t01 Wine grape cytosol 98.34 96.22
Bra008746.1-P Field mustard mitochondrion 97.79 93.65
VIT_01s0127g00440.t01 Wine grape cytosol, mitochondrion 98.34 90.82
TraesCS3D01G330500.1 Wheat cytosol 98.89 71.31
VIT_07s0005g02000.t01 Wine grape cytosol 98.34 64.96
Os08t0248900-01 Rice nucleus, plasma membrane 61.88 61.54
Os10t0580200-01 Rice plasma membrane 60.22 56.77
Os02t0699300-01 Rice cytosol, extracellular, plastid 38.67 56.45
Os11t0586900-02 Rice cytosol 54.14 53.26
VIT_14s0060g00690.t01 Wine grape golgi 98.34 51.74
Os02t0128600-01 Rice mitochondrion 55.25 51.55
Os06t0114200-00 Rice plasma membrane 52.49 50.26
Os02t0327100-01 Rice cytosol 48.62 47.57
Os03t0392300-01 Rice cytosol 35.36 31.53
Os07t0620400-01 Rice cytosol 34.25 30.54
Protein Annotations
MapMan:22.3.2.1Gene3D:3.40.50.300EntrezGene:4327591EMBL:AK062251EMBL:AK065370ProteinID:BAB90396.1
ProteinID:BAD68219.1ProteinID:BAD82682.1ProteinID:BAF06513.1ProteinID:BAS74894.1EMBL:D10859ProteinID:EEE55569.1
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0006810GO:GO:0008150GO:GO:0015031
GO:GO:0016192InterPro:IPR024156EnsemblPlantsGene:Os01g0813400EnsemblPlants:Os01t0813400-01InterPro:P-loop_NTPasePFAM:PF00025
PRINTS:PR00328PFscan:PS51417PANTHER:PTHR11711PANTHER:PTHR11711:SF215UniProt:Q06396SMART:SM00175
SMART:SM00177SMART:SM00178SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARFInterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231UniParc:UPI0000457DD3RefSeq:XP_015618373.1:::
Description
ADP-ribosylation factor 4, ADP-ribosylation factor A1aSimilar to ADP-ribosylation factor 1. (Os01t0813400-01)
Coordinates
chr1:+:34580341..34583532
Molecular Weight (calculated)
20681.9 Da
IEP (calculated)
6.960
GRAVY (calculated)
-0.207
Length
181 amino acids
Sequence
(BLAST)
001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)
001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
Arabidopsis Description
ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.