Factsheet for Os01t0265100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
plastid: 21433289

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0811900-01	Rice	plasma membrane	98.89	98.89
Os05t0489600-03	Rice	plasma membrane	97.79	97.79
Os07t0223100-01	Rice	plasma membrane	97.79	97.79
Os07t0223400-01	Rice	mitochondrion	97.79	97.79
Os01t0813400-01	Rice	plasma membrane	97.24	97.24
Os08t0248900-01	Rice	nucleus, plasma membrane	61.33	60.99
Os02t0699300-01	Rice	cytosol, extracellular, plastid	38.67	56.45
Os10t0580200-01	Rice	plasma membrane	59.67	56.25
Os11t0586900-02	Rice	cytosol	54.7	53.8
Os02t0128600-01	Rice	mitochondrion	55.8	52.06
Os06t0114200-00	Rice	plasma membrane	53.04	50.79
Os02t0327100-01	Rice	cytosol	48.62	47.57
Os03t0392300-01	Rice	cytosol	35.91	32.02
Os07t0620400-01	Rice	cytosol	35.36	31.53

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:4326208	EMBL:AK067217	ProteinID:BAA90347.1	ProteinID:BAA92519.1
ProteinID:BAF04582.1	ProteinID:BAS71456.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	EnsemblPlantsGene:Os01g0265100	EnsemblPlants:Os01t0265100-01
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF215
UniProt:Q9LDC9	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00000A43E8	RefSeq:XP_015611313.1	RefSeq:XP_015611320.1

Description

ADP-RIBOSYLATION FACTOR A1ESimilar to ADP-ribosylation factor. (Os01t0265100-01)

Coordinates

chr1:-:9019849..9024048

Molecular Weight (calculated)

20697.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.220

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFSKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TTGEGLYEGL DWLSSNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.