Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89435 | Sorghum | cytosol | 78.84 | 78.84 |
| Zm00001d044868_P001 | Maize | cytosol | 77.78 | 77.78 |
| Os10t0580200-01 | Rice | plasma membrane | 71.43 | 70.31 |
| Os02t0128600-01 | Rice | mitochondrion | 68.25 | 66.49 |
| Os02t0699300-01 | Rice | cytosol, extracellular, plastid | 41.27 | 62.9 |
| Os01t0265100-01 | Rice | plasma membrane, plastid | 50.79 | 53.04 |
| Os03t0811900-01 | Rice | plasma membrane | 50.79 | 53.04 |
| Os07t0223100-01 | Rice | plasma membrane | 50.79 | 53.04 |
| Os07t0223400-01 | Rice | mitochondrion | 50.79 | 53.04 |
| Os01t0813400-01 | Rice | plasma membrane | 50.26 | 52.49 |
| Os05t0489600-03 | Rice | plasma membrane | 50.26 | 52.49 |
| Os08t0248900-01 | Rice | nucleus, plasma membrane | 48.68 | 50.55 |
| Os11t0586900-02 | Rice | cytosol | 42.33 | 43.48 |
| Os02t0327100-01 | Rice | cytosol | 35.45 | 36.22 |
| Os03t0392300-01 | Rice | cytosol | 32.28 | 30.05 |
| Os07t0620400-01 | Rice | cytosol | 31.22 | 29.06 |
Protein Annotations
| EntrezGene:107276116 | MapMan:22.3.2.1 | Gene3D:3.40.50.300 | ProteinID:BAA92725.1 | ProteinID:BAS95823.1 | ProteinID:EAZ35596.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | InterPro:IPR024156 | EnsemblPlantsGene:Os06g0114200 | EnsemblPlants:Os06t0114200-00 | InterPro:P-loop_NTPase | PFAM:PF00025 |
| PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF183 | UniProt:Q9LWT5 | SMART:SM00175 |
| SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR |
| TIGRFAMs:TIGR00231 | UniParc:UPI00000A7473 | RefSeq:XP_015642612.1 | : | : | : |
Description
ADP-RIBOSYLATION FACTOR B1ASimilar to ATARFB1B; GTP binding. (Os06t0114200-00)
Coordinates
chr6:+:819373..820356
Molecular Weight (calculated)
21331.9 Da
IEP (calculated)
8.467
GRAVY (calculated)
-0.120
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQSLRKLFD SFCTKEMKVL MLGLDAAGKT TILYRLHIGE VLSSIPTIGF NVEKVEYKNV AFTVWDVGGQ DKLRPLWRQY FRNADALIYV VDSMDRERIG
101: VAKEEFQAII RDPLMLNSVI LLLANKQDLK GAMSSSEVCQ RLGAYEELKN RRWHCQGASA LTGDGLHGGL DWLASTLRDV QTWGTSVRF
101: VAKEEFQAII RDPLMLNSVI LLLANKQDLK GAMSSSEVCQ RLGAYEELKN RRWHCQGASA LTGDGLHGGL DWLASTLRDV QTWGTSVRF
001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF
Arabidopsis Description
ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.