Factsheet for Os05t0489600-03

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
extracellular: 18372294
plastid: 27992503
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	100.0	100.0
TraesCS3B01G368600.1	Wheat	mitochondrion	100.0	100.0
PGSC0003DMT400035158	Potato	mitochondrion	99.45	99.45
Solyc05g005190.2.1	Tomato	nucleus	99.45	99.45
Os01t0813400-01	Rice	plasma membrane	99.45	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	99.45	99.45
KRH45651	Soybean	mitochondrion	99.45	99.45
KRG99354	Soybean	mitochondrion	99.45	99.45
KRG96566	Soybean	mitochondrion	98.89	98.89
KRG90489	Soybean	mitochondrion	98.89	98.89
PGSC0003DMT400042276	Potato	mitochondrion	98.89	98.89
KRH33780	Soybean	mitochondrion, peroxisome	98.34	98.34
Os01t0265100-01	Rice	plasma membrane, plastid	97.79	97.79
Os03t0811900-01	Rice	plasma membrane	97.79	97.79
VIT_05s0020g00490.t01	Wine grape	cytosol	98.89	96.76
Os07t0223100-01	Rice	plasma membrane	96.69	96.69
Os07t0223400-01	Rice	mitochondrion	96.69	96.69
Bra008746.1-P	Field mustard	mitochondrion	98.34	94.18
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	98.89	91.33
HORVU1Hr1G068790.1	Barley	plastid	100.0	76.69
TraesCS1D01G305900.1	Wheat	golgi	100.0	68.82
VIT_07s0005g02000.t01	Wine grape	cytosol	98.89	65.33
Os08t0248900-01	Rice	nucleus, plasma membrane	61.33	60.99
Os10t0580200-01	Rice	plasma membrane	60.22	56.77
Os02t0699300-01	Rice	cytosol, extracellular, plastid	38.67	56.45
Os11t0586900-02	Rice	cytosol	54.14	53.26
VIT_14s0060g00690.t01	Wine grape	golgi	98.89	52.03
Os02t0128600-01	Rice	mitochondrion	55.25	51.55
Os06t0114200-00	Rice	plasma membrane	52.49	50.26
Os02t0327100-01	Rice	cytosol	48.07	47.03
Os03t0392300-01	Rice	cytosol	35.36	31.53
Os07t0620400-01	Rice	cytosol	34.25	30.54

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:4339157	ProteinID:AAT77289.1	EMBL:AK061970	EMBL:AK067029
EMBL:AK120035	ProteinID:BAF17806.1	ProteinID:BAS94643.1	EMBL:D17760	ProteinID:EEE64179.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006464	GO:GO:0006471	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016192
GO:GO:0019538	InterPro:IPR024156	EMBL:KJ909975	EnsemblPlantsGene:Os05g0489600	EnsemblPlants:Os05t0489600-03	InterPro:P-loop_NTPase
UniProt:P51823	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182
UniProt:Q0DH67	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0000000A3E	RefSeq:XP_015638732.1	:

Description

ADP-ribosylation factor, ADP-ribosylation factor 1, ADP-ribosylation factor A1bSimilar to ADP-ribosylation factor 1. (Os05t0489600-01);Similar to ADP-ribosylation factor 1. (Os05t0489600-03)

Coordinates

chr5:-:24057380..24060567

Molecular Weight (calculated)

20709.0 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.222

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.