Factsheet for TraesCS1D01G305900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	68.82	100.0
TraesCS3B01G368600.1	Wheat	mitochondrion	68.82	100.0
Os05t0489600-03	Rice	plasma membrane	68.82	100.0
Solyc05g005190.2.1	Tomato	nucleus	68.44	99.45
PGSC0003DMT400035158	Potato	mitochondrion	68.44	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	68.44	99.45
KRH45651	Soybean	mitochondrion	68.44	99.45
KRG99354	Soybean	mitochondrion	68.44	99.45
KRG96566	Soybean	mitochondrion	68.06	98.89
KRG90489	Soybean	mitochondrion	68.06	98.89
PGSC0003DMT400042276	Potato	mitochondrion	68.06	98.89
KRH33780	Soybean	mitochondrion, peroxisome	67.68	98.34
VIT_05s0020g00490.t01	Wine grape	cytosol	68.06	96.76
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	66.54	96.69
Bra008746.1-P	Field mustard	mitochondrion	67.68	94.18
TraesCS5D01G150000.1	Wheat	cytosol	64.26	92.35
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	68.06	91.33
TraesCS5D01G480200.1	Wheat	unclear	69.2	86.26
HORVU1Hr1G068790.1	Barley	plastid	75.29	83.9
TraesCS3D01G330500.1	Wheat	cytosol	71.1	74.5
VIT_07s0005g02000.t01	Wine grape	cytosol	70.72	67.88
TraesCS1D01G201300.1	Wheat	cytosol	41.06	56.54
TraesCS6D01G246900.1	Wheat	cytosol	40.68	56.02
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	41.44	55.05
VIT_14s0060g00690.t01	Wine grape	golgi	71.86	54.94
TraesCS4D01G152600.1	Wheat	cytosol	36.5	52.17
TraesCS5D01G020800.1	Wheat	cytosol	32.7	46.49
TraesCS1D01G429700.1	Wheat	cytosol	32.32	45.95
TraesCS4D01G018600.1	Wheat	cytosol	20.91	37.67
TraesCS1D01G072000.1	Wheat	peroxisome	24.33	31.53
TraesCS2D01G172000.1	Wheat	peroxisome	22.81	30.15

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006471	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016192
GO:GO:0019538	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1D01G305900	EnsemblPlants:TraesCS1D01G305900.1
TIGR:cd04150	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:403236050..403239527

Molecular Weight (calculated)

29638.6 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.486

Length

263 amino acids

Sequence
(BLAST)

001: MRLPRRNPAP PAGDPPSTSL YRLPRVRPSR PPSLSSISLL LLPPIPNQGG TRREEGKGRE EEITEPSART GQQAPRSRTG AEMGLTFTKL FSRLFAKKEM
101: RILMVGLDAA GKTTILYKLK LGEIVTTIPT IGFNVETVEY KNISFTVWDV GGQDKIRPLW RHYFQNTQGL IFVVDSNDRE RVVEARDELH RMLNEDELRD
201: AVLLVFANKQ DLPNAMNAAE ITDKLGLHSL RQRHWYIQST CATSGEGLYE GLDWLSNNIA NKA

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.