Factsheet for TraesCS3B01G368600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	100.0	100.0
Os05t0489600-03	Rice	plasma membrane	100.0	100.0
Solyc05g005190.2.1	Tomato	nucleus	99.45	99.45
KRG99354	Soybean	mitochondrion	99.45	99.45
KRH45651	Soybean	mitochondrion	99.45	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	99.45	99.45
PGSC0003DMT400035158	Potato	mitochondrion	99.45	99.45
KRG90489	Soybean	mitochondrion	98.89	98.89
KRG96566	Soybean	mitochondrion	98.89	98.89
PGSC0003DMT400042276	Potato	mitochondrion	98.89	98.89
KRH33780	Soybean	mitochondrion, peroxisome	98.34	98.34
TraesCS1B01G317000.1	Wheat	mitochondrion	99.45	97.83
VIT_05s0020g00490.t01	Wine grape	cytosol	98.89	96.76
Bra008746.1-P	Field mustard	mitochondrion	98.34	94.18
TraesCS5B01G140900.1	Wheat	cytosol	93.37	93.37
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	98.89	91.33
TraesCS5B01G479100.1	Wheat	golgi	97.79	83.89
TraesCS1D01G305900.1	Wheat	golgi	100.0	68.82
VIT_07s0005g02000.t01	Wine grape	cytosol	98.89	65.33
HORVU3Hr1G079700.1	Barley	cytosol	100.0	58.2
TraesCS1B01G212500.1	Wheat	cytosol	59.67	56.54
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	60.22	55.05
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	53.04	52.17
VIT_14s0060g00690.t01	Wine grape	golgi	98.89	52.03
TraesCS6B01G114900.2	Wheat	mitochondrion	54.14	50.52
TraesCS1B01G453100.1	Wheat	cytosol	32.04	49.15
TraesCS5B01G013100.1	Wheat	cytosol	46.96	45.95
TraesCS6B01G295200.1	Wheat	plastid	51.93	38.21
TraesCS1B01G087700.1	Wheat	peroxisome	34.81	31.19
TraesCS2B01G191100.2	Wheat	cytosol, plastid	28.18	23.83

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS3B01G368600	EnsemblPlants:TraesCS3B01G368600.1	TIGR:cd04150	:	:	:

Description

No Description!

Coordinates

chr3B:+:581026448..581031825

Molecular Weight (calculated)

20709.0 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.222

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.