Factsheet for Solyc05g005190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99354	Soybean	mitochondrion	100.0	100.0
KRH45651	Soybean	mitochondrion	100.0	100.0
KRH69574	Soybean	endoplasmic reticulum, nucleus	100.0	100.0
PGSC0003DMT400035158	Potato	mitochondrion	100.0	100.0
EES19719	Sorghum	mitochondrion	99.45	99.45
TraesCS3B01G368600.1	Wheat	mitochondrion	99.45	99.45
KRG90489	Soybean	mitochondrion	99.45	99.45
KRG96566	Soybean	mitochondrion	99.45	99.45
Os05t0489600-03	Rice	plasma membrane	99.45	99.45
Os01t0813400-01	Rice	plasma membrane	98.89	98.89
TraesCS3A01G337300.1	Wheat	mitochondrion	98.89	98.35
Solyc01g100860.2.1	Tomato	unclear	98.34	98.34
Zm00001d038533_P001	Maize	plastid	98.89	97.28
TraesCS1B01G317000.1	Wheat	mitochondrion	98.89	97.28
TraesCS1A01G306200.1	Wheat	mitochondrion	98.89	96.24
Bra008746.1-P	Field mustard	mitochondrion	98.89	94.71
Solyc01g008000.2.1	Tomato	plastid, unclear	98.89	85.65
Solyc02g092970.2.1	Tomato	cytosol	86.19	81.68
HORVU1Hr1G068790.1	Barley	plastid	99.45	76.27
Solyc01g100870.2.1	Tomato	plastid	86.19	74.29
TraesCS3D01G330500.1	Wheat	cytosol	98.89	71.31
HORVU0Hr1G027130.1	Barley	plasma membrane	99.45	70.87
TraesCS1D01G305900.1	Wheat	golgi	99.45	68.44
Solyc06g072800.2.1	Tomato	cytosol	45.3	62.12
Solyc03g096910.2.1	Tomato	cytosol	44.75	61.36
Solyc07g006640.2.1	Tomato	plastid	60.77	60.44
Solyc12g099080.1.1	Tomato	unclear	74.03	60.09
HORVU3Hr1G079700.1	Barley	cytosol	99.45	57.88
Solyc04g025560.2.1	Tomato	unclear	77.9	55.73
VIT_14s0060g00690.t01	Wine grape	golgi	99.45	52.33
Solyc03g005300.2.1	Tomato	cytosol	51.93	51.37
Solyc07g014650.2.1	Tomato	cytosol	44.2	47.34
Solyc10g074630.1.1	Tomato	cytosol	33.15	31.09

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4BW50	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc05g005190.2
EnsemblPlants:Solyc05g005190.2.1	TIGRFAMs:TIGR00231	UniParc:UPI000188B74E	:	:	:

Description

No Description!

Coordinates

chr5:+:170330..172998

Molecular Weight (calculated)

20694.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.222

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.