Factsheet for HORVU0Hr1G027130.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	71.26	100.0
HORVU1Hr1G068790.1	Barley	plastid	92.91	100.0
KRH45651	Soybean	mitochondrion	70.87	99.45
KRG99354	Soybean	mitochondrion	70.87	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	70.87	99.45
PGSC0003DMT400035158	Potato	mitochondrion	70.87	99.45
Solyc05g005190.2.1	Tomato	nucleus	70.87	99.45
PGSC0003DMT400042276	Potato	mitochondrion	70.47	98.89
KRG90489	Soybean	mitochondrion	70.47	98.89
KRG96566	Soybean	mitochondrion	70.47	98.89
KRH33780	Soybean	mitochondrion, peroxisome	70.08	98.34
VIT_05s0020g00490.t01	Wine grape	cytosol	70.47	96.76
Bra008746.1-P	Field mustard	mitochondrion	70.08	94.18
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	70.47	91.33
HORVU5Hr1G111500.2	Barley	mitochondrion	69.69	75.64
HORVU5Hr1G045440.2	Barley	cytosol, plastid	69.69	70.24
VIT_07s0005g02000.t01	Wine grape	cytosol	72.44	67.15
HORVU2Hr1G054780.5	Barley	cytosol	42.91	63.74
HORVU3Hr1G079700.1	Barley	cytosol	75.59	61.74
HORVU7Hr1G061220.1	Barley	cytosol, mitochondrion	42.91	59.89
HORVU1Hr1G051350.1	Barley	cytosol	42.52	56.54
VIT_14s0060g00690.t01	Wine grape	golgi	74.02	54.65
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.01	51.09
HORVU6Hr1G016100.1	Barley	cytosol, mitochondrion	38.58	48.51
HORVU6Hr1G067840.2	Barley	cytosol	43.7	39.78
HORVU5Hr1G004340.2	Barley	cytosol, plastid	33.86	36.13
HORVU5Hr1G002120.6	Barley	cytosol, plastid	35.83	35.83
HORVU1Hr1G014610.1	Barley	cytosol	25.2	31.53

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A287E9H5	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	EnsemblPlantsGene:HORVU0Hr1G027130	EnsemblPlants:HORVU0Hr1G027130.1
InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000B478073	SEG:seg	:

Description

No Description!

Coordinates

chrchrUn:+:144063784..144067941

Molecular Weight (calculated)

28548.2 Da

IEP (calculated)

10.415

GRAVY (calculated)

-0.537

Length

254 amino acids

Sequence
(BLAST)

001: PSTSLYRLPR VRPSRSLSLS LLHSSPPPPP ATDPKPGRNP ARGGQRKRRG DHPADRATAR TGQQPSRSRA GADMGLTFTK LFSRLFAKKE MRILMVGLDA
101: AGKTTILYKL KLGEIVTTIP TIGFNVETVE YKNISFTVWD VGGQDKIRPL WRHYFQNTQG LIFVVDSNDR ERVVEARDEL HRMLNEDELR DAVLLVFANK
201: QDLPNAMNAA EITDKLGLHS LRQRHWYIQS TCATSGEGLY EGLDWLSNNI ANKA

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.