Factsheet for Solyc03g005300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034971	Potato	cytosol	99.45	99.45
KRG92448	Soybean	endoplasmic reticulum	89.62	89.62
KRH34351	Soybean	endoplasmic reticulum	89.07	89.07
AT3G22950.1	Thale cress	cytosol	89.07	89.07
KRG92441	Soybean	endoplasmic reticulum	88.52	88.52
VIT_05s0020g04460.t01	Wine grape	cytosol	57.92	88.33
Bra039725.1-P	Field mustard	cytosol	87.98	87.98
CDY36874	Canola	cytosol	87.98	87.98
CDY53727	Canola	cytosol	87.98	87.98
CDY16265	Canola	cytosol	87.43	87.43
Bra036878.1-P	Field mustard	cytosol	86.89	86.89
CDY29751	Canola	cytosol	86.89	86.89
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	84.7	84.7
Os11t0586900-02	Rice	cytosol	84.15	83.7
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	83.61	83.61
KRH34356	Soybean	cytosol, extracellular	62.3	82.01
Zm00001d052978_P001	Maize	extracellular	81.97	81.52
EES08754	Sorghum	cytosol, mitochondrion	81.97	81.52
TraesCS4D01G152600.1	Wheat	cytosol	81.42	80.98
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.87	80.43
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	80.87	80.43
TraesCS4A01G149200.1	Wheat	cytosol	80.87	80.43
Solyc01g100860.2.1	Tomato	unclear	51.37	51.93
Solyc05g005190.2.1	Tomato	nucleus	51.37	51.93
Solyc02g092970.2.1	Tomato	cytosol	51.91	49.74
Solyc07g006640.2.1	Tomato	plastid	48.63	48.9
Solyc06g072800.2.1	Tomato	cytosol	34.97	48.48
Solyc03g096910.2.1	Tomato	cytosol	34.43	47.73
Solyc01g008000.2.1	Tomato	plastid, unclear	51.91	45.45
Solyc01g100870.2.1	Tomato	plastid	46.99	40.95
Solyc07g014650.2.1	Tomato	cytosol	36.07	39.05
Solyc10g074630.1.1	Tomato	cytosol	33.88	32.12
Solyc12g099080.1.1	Tomato	unclear	36.61	30.04
Solyc04g025560.2.1	Tomato	unclear	38.25	27.67

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	InterPro:IPR024156	UniProt:K4BDV4
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc03g005300.2	EnsemblPlants:Solyc03g005300.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002769075	:

Description

No Description!

Coordinates

chr3:-:167876..173442

Molecular Weight (calculated)

20543.7 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.127

Length

183 amino acids

Sequence
(BLAST)

001: MGGFVSRFWF MMFPAKEYKI IVVGLDNAGK TTTLYKLHLG EVVTTNPTVG SNVEELVYKN IRFEVWDLGG QERLRTSWAT YYRGTHAVIV VIDSSDRARI
101: STMKDELFRL LPHEDLQNAV VLVFANKQDL KDAMTPAEIT DALSLHSIKN HDWHIQACSA LTGDGLYDGL GWIAQKVPGK TPT

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.