CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052978_P001	Maize	extracellular	98.91	98.91
Os11t0586900-02	Rice	cytosol	96.74	96.74
TraesCS4D01G152600.1	Wheat	cytosol	94.02	94.02
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	94.02	94.02
TraesCS4A01G149200.1	Wheat	cytosol	93.48	93.48
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.39	92.39
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	84.78	85.25
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	84.78	85.25
VIT_05s0020g04460.t01	Wine grape	cytosol	55.43	85.0
AT3G22950.1	Thale cress	cytosol	83.7	84.15
KRG92448	Soybean	endoplasmic reticulum	82.07	82.51
Bra039725.1-P	Field mustard	cytosol	81.52	81.97
Solyc03g005300.2.1	Tomato	cytosol	81.52	81.97
KRH34351	Soybean	endoplasmic reticulum	81.52	81.97
CDY53727	Canola	cytosol	81.52	81.97
KRG92441	Soybean	endoplasmic reticulum	81.52	81.97
PGSC0003DMT400034971	Potato	cytosol	80.98	81.42
Bra036878.1-P	Field mustard	cytosol	80.43	80.87
CDY16265	Canola	cytosol	80.43	80.87
CDY29751	Canola	cytosol	80.43	80.87
CDY36874	Canola	cytosol	80.43	80.87
KRH34356	Soybean	cytosol, extracellular	58.7	77.7
EER96075	Sorghum	mitochondrion	52.17	53.04
EES19719	Sorghum	mitochondrion	51.63	52.49
EER93218	Sorghum	mitochondrion	51.63	52.49
EES14799	Sorghum	cytosol, mitochondrion	47.28	47.8
EES07411	Sorghum	cytosol	46.74	44.33
EES06219	Sorghum	mitochondrion	45.65	43.3
EER94416	Sorghum	cytosol	45.11	42.78
EER89435	Sorghum	cytosol	43.48	42.33
OQU85607	Sorghum	cytosol, mitochondrion	39.67	40.78
KXG37868	Sorghum	cytosol	36.41	36.22
OQU87737	Sorghum	cytosol	51.09	35.47
EER99714	Sorghum	cytosol	34.78	31.53
OQU86657	Sorghum	peroxisome, plastid	52.17	31.27
EER94751	Sorghum	cytosol	32.07	29.21

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8071981	UniProt:C5Y5C3	EnsemblPlants:EES08754	ProteinID:EES08754
ProteinID:EES08754.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177
SMART:SM00178	EnsemblPlantsGene:SORBI_3005G168100	SUPFAM:SSF52540	unigene:Sbi.10918	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001A8637F	RefSeq:XP_002449766.1	:

Description

hypothetical protein

Coordinates

chr5:+:64666879..64669812

Molecular Weight (calculated)

20331.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

0.061

Length

184 amino acids

Sequence
(BLAST)

001: MGAWMSRVWF LMFPAREYKL VVVGLDNAGK TTTLYKLHLG EAVTAAPTIG SNVEEVVFKN LRFEVWDLGG QESLRTSWAT YYRGTHAVIV VIDSTDRARI
101: NIIKDELFRL LQHADLEGAV VLVFANKQDL KDAMAPAEIT DALSLHSIKN HDWHIQASCA ITGEGLYDGL GWIAQKVAGK ATAS

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.