CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044868_P001	Maize	cytosol	94.71	94.71
Os06t0114200-00	Rice	plasma membrane	78.84	78.84
EER94416	Sorghum	cytosol	68.78	67.01
EES07411	Sorghum	cytosol	68.78	67.01
EES06219	Sorghum	mitochondrion	67.2	65.46
EER93218	Sorghum	mitochondrion	49.74	51.93
EER96075	Sorghum	mitochondrion	49.74	51.93
EES19719	Sorghum	mitochondrion	48.68	50.83
EES14799	Sorghum	cytosol, mitochondrion	47.62	49.45
EES08754	Sorghum	cytosol, mitochondrion	42.33	43.48
OQU85607	Sorghum	cytosol, mitochondrion	40.21	42.46
KXG37868	Sorghum	cytosol	36.51	37.3
OQU87737	Sorghum	cytosol	49.21	35.09
OQU86657	Sorghum	peroxisome, plastid	50.26	30.94
EER99714	Sorghum	cytosol	28.57	26.6
EER94751	Sorghum	cytosol	27.51	25.74

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8080050	UniProt:C5Z6X4	EnsemblPlants:EER89435	ProteinID:EER89435
ProteinID:EER89435.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF183	SMART:SM00175	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3010G088100
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001A89883
RefSeq:XP_002438068.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:7528671..7530217

Molecular Weight (calculated)

20818.2 Da

IEP (calculated)

8.225

GRAVY (calculated)

-0.014

Length

189 amino acids

Sequence
(BLAST)

001: MGQSLMKFFF DSSCQKEVKV VMLGLDAAGK TTILHRLHVG EVLSTVPTIG FNVEKVEYKN VAFTVWDVGG QDKLRPLWRQ YLSNSDALIY VVDSTDRDRI
101: GVAREEFQAI VKDPLMLSSV LLVLANKQDM KGAMSPSEVG QRLGLYDLKN RASRAVGACA LTGEGLHEGL GWLAATLKDA HTWGTSVRF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.