CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015121_P002	Maize	mitochondrion	98.97	98.97
Os02t0128600-01	Rice	mitochondrion	97.42	97.42
TraesCSU01G019600.1	Wheat	mitochondrion	90.72	90.72
TraesCS6B01G114900.2	Wheat	mitochondrion	90.72	90.72
HORVU6Hr1G016100.1	Barley	cytosol, mitochondrion	87.11	83.66
TraesCS6A01G086900.2	Wheat	cytosol	83.51	80.2
EES07411	Sorghum	cytosol	76.8	76.8
EER94416	Sorghum	cytosol	76.29	76.29
EER89435	Sorghum	cytosol	65.46	67.2
EER96075	Sorghum	mitochondrion	51.55	55.25
EES19719	Sorghum	mitochondrion	51.03	54.7
EER93218	Sorghum	mitochondrion	51.03	54.7
EES14799	Sorghum	cytosol, mitochondrion	49.48	52.75
EES08754	Sorghum	cytosol, mitochondrion	43.3	45.65
OQU85607	Sorghum	cytosol, mitochondrion	41.75	45.25
KXG37868	Sorghum	cytosol	36.6	38.38
OQU87737	Sorghum	cytosol	51.03	37.36
OQU86657	Sorghum	peroxisome, plastid	51.03	32.25
EER99714	Sorghum	cytosol	32.99	31.53
EER94751	Sorghum	cytosol	30.93	29.7

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8055086	UniProt:C5XTS1	EnsemblPlants:EES06219	ProteinID:EES06219
ProteinID:EES06219.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF183	SMART:SM00175	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3004G027100
SUPFAM:SSF52540	unigene:Sbi.10079	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI0001A85F7F	RefSeq:XP_002453243.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:2161035..2164714

Molecular Weight (calculated)

21839.4 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.102

Length

194 amino acids

Sequence
(BLAST)

001: MGQALRRLFD SFFSTREMRV VMLGLDAAGK TTILYRLHMG EVLSTVPTVG FNVEKVQYKN VVFTVWDVGG QEKLRSLWKM YLSNSDALIY VVDSLDRERI
101: RDARQEFQTI IKDPLMANSI ILVFANKQDL RGAMSTDEVS EGLGLHDLRN RIWHIQGTCA LRGEGLYDGL DWLASTLKQL QESGHATSVA GPSI

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.