CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96075	Sorghum	mitochondrion	98.34	98.34
KRG93262	Soybean	nucleus	97.79	97.79
KRH56584	Soybean	mitochondrion	97.79	97.79
EES19719	Sorghum	mitochondrion	97.24	97.24
AT2G47170.2	Thale cress	mitochondrion	97.24	97.24
PGSC0003DMT400003226	Potato	mitochondrion	97.24	97.24
AT1G10630.2	Thale cress	mitochondrion	97.24	97.24
CDY11588	Canola	mitochondrion, peroxisome	96.69	96.69
VIT_14s0066g01080.t01	Wine grape	mitochondrion	96.69	96.69
CDY54291	Canola	mitochondrion, peroxisome	96.69	96.69
CDY44152	Canola	mitochondrion, peroxisome	96.69	96.69
CDY41444	Canola	mitochondrion	96.69	96.69
CDY25787	Canola	mitochondrion, peroxisome	96.69	96.69
CDY09441	Canola	mitochondrion, peroxisome	96.69	96.69
CDY04706	Canola	mitochondrion, peroxisome	96.69	96.69
CDY03747	Canola	mitochondrion, peroxisome	96.69	96.69
CDX91717	Canola	mitochondrion	96.69	96.69
Bra016344.1-P	Field mustard	mitochondrion	96.69	96.69
AT1G70490.4	Thale cress	mitochondrion, peroxisome	96.69	96.69
AT1G23490.1	Thale cress	mitochondrion, peroxisome	96.69	96.69
CDY47137	Canola	peroxisome	96.13	96.13
Bra024604.1-P	Field mustard	mitochondrion	96.13	96.13
Bra012376.1-P	Field mustard	cytosol	96.69	93.09
KRH36902	Soybean	endoplasmic reticulum	92.82	91.3
CDX68343	Canola	cytosol	90.06	89.56
Bra003954.1-P	Field mustard	cytosol	89.5	89.5
Zm00001d013007_P001	Maize	plastid	99.45	88.67
TraesCS5D01G480200.1	Wheat	unclear	100.0	85.78
TraesCS5A01G467400.1	Wheat	cytosol	99.45	85.31
CDY23500	Canola	cytosol	89.5	75.7
OQU87737	Sorghum	cytosol	96.69	66.04
EES14799	Sorghum	cytosol, mitochondrion	61.88	61.54
OQU85607	Sorghum	cytosol, mitochondrion	58.01	58.66
OQU86657	Sorghum	peroxisome, plastid	98.34	57.98
EER94416	Sorghum	cytosol	59.67	55.67
GSMUA_Achr6P08570_001	Banana	cytosol	98.34	55.45
EES07411	Sorghum	cytosol	58.56	54.64
EES08754	Sorghum	cytosol, mitochondrion	52.49	51.63
EES06219	Sorghum	mitochondrion	54.7	51.03
EER89435	Sorghum	cytosol	51.93	49.74
KXG37868	Sorghum	cytosol	50.28	49.19
EER99714	Sorghum	cytosol	35.36	31.53
EER94751	Sorghum	cytosol	34.81	31.19

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8057077	UniProt:C5WVZ4	EnsemblPlants:EER93218	ProteinID:EER93218
ProteinID:EER93218.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3001G040800
SUPFAM:SSF52540	unigene:Sbi.18115	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI0001A829F8	RefSeq:XP_002466220.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3040202..3042981

Molecular Weight (calculated)

20670.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.206

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TTGEGLYEGL DWLSSNIASK S

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.