CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	EES06216	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017650_P002	Maize	cytosol	78.77	79.21
EES19719	Sorghum	mitochondrion	59.78	59.12
EER96075	Sorghum	mitochondrion	59.78	59.12
EER93218	Sorghum	mitochondrion	58.66	58.01
PGSC0003DMT400075807	Potato	cytosol	54.75	54.14
PGSC0003DMT400064241	Potato	cytosol	54.75	54.14
PGSC0003DMT400064240	Potato	cytosol	51.4	54.12
Solyc02g092970.2.1	Tomato	cytosol	54.19	50.79
EES14799	Sorghum	cytosol, mitochondrion	45.81	45.05
AT2G15310.1	Thale cress	mitochondrion	51.4	44.88
EES07411	Sorghum	cytosol	46.93	43.3
EER94416	Sorghum	cytosol	46.37	42.78
CDY48224	Canola	mitochondrion	48.04	41.95
EES06219	Sorghum	mitochondrion	45.25	41.75
CDX71216	Canola	mitochondrion	48.04	41.15
OQU87737	Sorghum	cytosol	60.34	40.75
EER89435	Sorghum	cytosol	42.46	40.21
EES08754	Sorghum	cytosol, mitochondrion	40.78	39.67
KXG37868	Sorghum	cytosol	37.43	36.22
OQU86657	Sorghum	peroxisome, plastid	58.66	34.2
EER94751	Sorghum	cytosol	32.96	29.21
EER99714	Sorghum	cytosol	32.96	29.06
Bra036410.1-P	Field mustard	mitochondrion	48.04	20.48

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A194YRX2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	ProteinID:KXG30988.1	ProteinID:KXG30989.1
ProteinID:OQU85605.1	EnsemblPlants:OQU85607	ProteinID:OQU85607	ProteinID:OQU85607.1	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF232	SMART:SM00177	SMART:SM00178
EnsemblPlantsGene:SORBI_3004G277800	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI00026630FB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:62080057..62081566

Molecular Weight (calculated)

19862.2 Da

IEP (calculated)

6.865

GRAVY (calculated)

0.066

Length

179 amino acids

Sequence
(BLAST)

001: MGLAMGRLLG WKQEARIVLL GLACAGKTAI LHKLKHGHVV TTGPTIGFNT ETLEYNGISF SVWDVGGSQG ELLRLLLRHY LYAAQGVIFV VDSSDQEWFH
101: QAKDLLNMIL NEDKFRDPAL LLFATKQDLP NAMSAAEIAD KLGLQSLLCN RRRWHIQSCC AISGEGLHEG MDWLCANIQ

Best Arabidopsis Sequence Match ( AT2G47170.1 )
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.