Factsheet for PGSC0003DMT400064241

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400062265
PGSC0003DMT400068395

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	PGSC0003DMT400062265	AT1G32380.1	21798944
AT2G15310.1	PGSC0003DMT400068395	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075807	Potato	cytosol	100.0	100.0
PGSC0003DMT400064240	Potato	cytosol	88.4	94.12
Solyc02g092970.2.1	Tomato	cytosol	98.34	93.19
PGSC0003DMT400003226	Potato	mitochondrion	87.85	87.85
PGSC0003DMT400042276	Potato	mitochondrion	87.85	87.85
PGSC0003DMT400035158	Potato	mitochondrion	87.29	87.29
PGSC0003DMT400065739	Potato	mitochondrion	86.74	86.74
PGSC0003DMT400011952	Potato	golgi	81.22	81.67
AT2G15310.1	Thale cress	mitochondrion	67.4	59.51
CDY48224	Canola	mitochondrion	64.64	57.07
CDX71216	Canola	mitochondrion	64.64	55.98
OQU85607	Sorghum	cytosol, mitochondrion	54.14	54.75
PGSC0003DMT400069538	Potato	cytosol	57.46	53.89
PGSC0003DMT400034971	Potato	cytosol	53.59	53.01
PGSC0003DMT400001454	Potato	cytosol	56.35	52.85
Zm00001d017650_P002	Maize	cytosol	51.93	52.81
PGSC0003DMT400043258	Potato	cytosol	27.07	49.49
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	53.59	38.19
Bra036410.1-P	Field mustard	mitochondrion	64.64	27.86
PGSC0003DMT400043326	Potato	cytosol	28.73	21.94

Protein Annotations

EntrezGene:102580882	EntrezGene:102604236	EntrezGene:102604565	MapMan:22.3.2.1	Gene3D:3.40.50.300	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
InterPro:IPR024156	UniProt:M1CC02	InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG401024957	PGSC:PGSC0003DMG401024957
EnsemblPlants:PGSC0003DMT400064241	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI000294C8F4	RefSeq:XP_006339849.1	RefSeq:XP_006339850.1	RefSeq:XP_006355067.1	:

Description

ADP-ribosylation factor, arf [Source:PGSC_GENE;Acc:PGSC0003DMG401024957]

Coordinates

chr2:+:43336626..43345851

Molecular Weight (calculated)

20584.9 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.240

Length

181 amino acids

Sequence
(BLAST)

001: MGMSISKFVK MLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN SSFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRI
101: SEARDELHRM LNEEELRGAT ILVFANKQDL PNAMNVADIT DKLGLHSLRQ RRWYIQSACA TSGQGLYEGL DWLSHNITGK A

Best Arabidopsis Sequence Match ( AT1G70490.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A

Arabidopsis Description

ARF2-AADP-ribosylation factor 2-B [Source:UniProtKB/Swiss-Prot;Acc:P0DH91]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.