Factsheet for PGSC0003DMT400043258

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g014650.2.1	Tomato	cytosol	93.94	55.03
KRH76824	Soybean	cytosol	86.87	46.49
KRH28677	Soybean	cytosol	86.87	46.49
KXG37868	Sorghum	cytosol	85.86	45.95
AT2G18390.1	Thale cress	cytosol	84.85	45.41
Os02t0327100-01	Rice	cytosol	84.85	45.41
CDY29231	Canola	cytosol	83.84	44.86
Bra039613.1-P	Field mustard	cytosol	83.84	44.86
VIT_04s0023g01820.t01	Wine grape	cytosol	83.84	44.86
GSMUA_Achr9P26270_001	Banana	cytosol	83.84	44.86
CDY36479	Canola	cytosol	82.83	44.32
TraesCS5D01G020800.1	Wheat	cytosol	82.83	44.32
TraesCS5B01G013100.1	Wheat	cytosol	82.83	44.32
TraesCS5A01G014900.1	Wheat	cytosol	82.83	44.32
TraesCS1B01G453100.1	Wheat	cytosol	52.53	44.07
TraesCS1D01G429700.1	Wheat	cytosol	81.82	43.78
Bra024470.1-P	Field mustard	cytosol	80.81	43.24
TraesCS1A01G421700.1	Wheat	cytosol	81.82	41.12
HORVU5Hr1G004340.2	Barley	cytosol, plastid	82.83	34.45
Zm00001d033414_P001	Maize	extracellular	87.88	34.25
CDY13039	Canola	cytosol	83.84	33.88
HORVU5Hr1G002120.6	Barley	cytosol, plastid	83.84	32.68
TraesCS4D01G018600.1	Wheat	cytosol	42.42	28.77
PGSC0003DMT400064240	Potato	cytosol	48.48	28.24
PGSC0003DMT400035158	Potato	mitochondrion	50.51	27.62
PGSC0003DMT400003226	Potato	mitochondrion	50.51	27.62
PGSC0003DMT400042276	Potato	mitochondrion	50.51	27.62
PGSC0003DMT400065739	Potato	mitochondrion	50.51	27.62
PGSC0003DMT400011952	Potato	golgi	49.49	27.22
PGSC0003DMT400075807	Potato	cytosol	49.49	27.07
PGSC0003DMT400064241	Potato	cytosol	49.49	27.07
TraesCS4A01G292900.1	Wheat	cytosol	32.32	25.6
PGSC0003DMT400069538	Potato	cytosol	42.42	21.76
PGSC0003DMT400001454	Potato	cytosol	42.42	21.76
PGSC0003DMT400034971	Potato	cytosol	38.38	20.77
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	44.44	17.32
PGSC0003DMT400043326	Potato	cytosol	38.38	16.03

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0007275	GO:GO:0008150	GO:GO:0009558	GO:GO:0009653	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009960	GO:GO:0009987	InterPro:IPR024156	UniProt:M1BEC6
InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400016795	PGSC:PGSC0003DMG400016795	EnsemblPlants:PGSC0003DMT400043258	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF26	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	UniParc:UPI000296C701	SEG:seg	:	:	:

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016795]

Coordinates

chr5:+:46360028..46362413

Molecular Weight (calculated)

11534.5 Da

IEP (calculated)

4.514

GRAVY (calculated)

-0.540

Length

99 amino acids

Sequence
(BLAST)

1: MLYIWDVGGQ KTIRSYWRNY FEQTDGLVWV VDSSDLRRLD DCRYELHNLL KEERLSRASL LIFANKQDIQ GALSPDEIAN AMDNSRRAYT GEGLLEGFD

Best Arabidopsis Sequence Match ( AT2G18390.1 )
(BLAST)

001: MGLLSIIRKI KKKEKEMRIL MVGLDNSGKT TIVLKINGED TSVISPTLGF NIKTIIYQKY TLNIWDVGGQ KTIRSYWRNY FEQTDGLVWV VDSSDLRRLD
101: DCKMELDNLL KEERLAGSSL LILANKQDIQ GALTPDEIGK VLNLESMDKS RHWKIVGCSA YTGEGLLEGF DWLVQDIASR IYMLD

Arabidopsis Description

ARL2TTN5 [Source:UniProtKB/TrEMBL;Acc:A0A178VQD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.