Factsheet for PGSC0003DMT400070636

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18982	Soybean	endoplasmic reticulum	63.39	93.6
Solyc07g006640.2.1	Tomato	plastid	65.75	91.76
KRH02913	Soybean	cytosol	57.87	88.55
EES14799	Sorghum	cytosol, mitochondrion	62.2	86.81
Os08t0248900-01	Rice	nucleus, plasma membrane	61.81	86.26
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	61.42	85.71
HORVU7Hr1G061220.1	Barley	cytosol, mitochondrion	61.42	85.71
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	61.42	85.71
CDY45596	Canola	cytosol	61.42	85.71
CDY34756	Canola	cytosol	61.42	85.71
CDX76793	Canola	cytosol	61.42	85.71
CDX75192	Canola	cytosol	61.42	85.71
CDX68781	Canola	cytosol	61.42	85.71
Bra032062.1-P	Field mustard	cytosol	61.42	85.71
Bra011295.1-P	Field mustard	cytosol	61.42	85.71
Bra007833.1-P	Field mustard	cytosol	61.42	85.71
CDY36172	Canola	cytosol	61.02	85.16
AT2G24765.1	Thale cress	cytosol	61.02	85.16
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	61.42	78.79
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	61.42	78.79
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	61.02	78.28
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	63.78	72.97
PGSC0003DMT400065739	Potato	mitochondrion	41.34	58.01
PGSC0003DMT400035158	Potato	mitochondrion	41.34	58.01
PGSC0003DMT400003226	Potato	mitochondrion	41.34	58.01
PGSC0003DMT400042276	Potato	mitochondrion	40.94	57.46
PGSC0003DMT400011952	Potato	golgi	38.98	55.0
PGSC0003DMT400064241	Potato	cytosol	38.19	53.59
PGSC0003DMT400075807	Potato	cytosol	38.19	53.59
PGSC0003DMT400064240	Potato	cytosol	34.25	51.18
PGSC0003DMT400069538	Potato	cytosol	38.19	50.26
PGSC0003DMT400001454	Potato	cytosol	37.8	49.74
PGSC0003DMT400034971	Potato	cytosol	35.04	48.63
PGSC0003DMT400043258	Potato	cytosol	17.32	44.44
PGSC0003DMT400043326	Potato	cytosol	21.65	23.21

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:M1CMH0	InterPro:P-loop_NTPase	PFAM:PF00025
EnsemblPlantsGene:PGSC0003DMG400027460	PGSC:PGSC0003DMG400027460	EnsemblPlants:PGSC0003DMT400070636	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF41	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
UniParc:UPI000295D32D	SEG:seg	:	:	:	:

Description

ADP-ribosylation factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400027460]

Coordinates

chr7:+:2290366..2299729

Molecular Weight (calculated)

28550.6 Da

IEP (calculated)

6.129

GRAVY (calculated)

0.054

Length

254 amino acids

Sequence
(BLAST)

001: MGLVFSRLFS SLFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGP EGGRVPKLGL FAPQAKYACI LQDSHDVCLY
101: GGPSWVLLLL RPYWRCYFPN TQAIIYVVDS SDTDRLVVAN EEFHAILEEE ELKGAVVLIY ANKQDLPGAL DDAAVTEALE LHKIKNRQWA IFKTSAIKGE
201: GLFEGLDWQP TMIQGSVVIP QLEPVNYRLH GVNFTIAPKL PFNWVVFFGK DKQK

Best Arabidopsis Sequence Match ( AT2G24765.1 )
(BLAST)

001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG

Arabidopsis Description

ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.