CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93837
CDY01279
CDY32299
CDY68772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	CDX93837	AT1G32380.1	21798944
AT2G15310.1	CDY01279	AT1G32380.1	21798944
AT2G15310.1	CDY32299	AT1G32380.1	21798944
AT2G15310.1	CDY68772	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48224	Canola	mitochondrion	97.13	99.02
AT2G15310.1	Thale cress	mitochondrion	87.56	89.27
CDY47221	Canola	mitochondrion	56.46	65.19
PGSC0003DMT400075807	Potato	cytosol	55.98	64.64
CDY53050	Canola	cytosol	55.98	64.64
PGSC0003DMT400064241	Potato	cytosol	55.98	64.64
CDX93979	Canola	mitochondrion, peroxisome	55.98	64.64
PGSC0003DMT400064240	Potato	cytosol	52.15	64.12
CDY37791	Canola	cytosol	55.5	64.09
CDY51415	Canola	cytosol	55.5	64.09
CDY54291	Canola	mitochondrion, peroxisome	55.5	64.09
CDY44152	Canola	mitochondrion, peroxisome	55.5	64.09
CDY27506	Canola	cytosol	55.5	64.09
CDY25787	Canola	mitochondrion, peroxisome	55.5	64.09
CDY41444	Canola	mitochondrion	55.5	64.09
CDY11588	Canola	mitochondrion, peroxisome	55.5	64.09
CDY09441	Canola	mitochondrion, peroxisome	55.5	64.09
CDY04706	Canola	mitochondrion, peroxisome	55.5	64.09
CDY03747	Canola	mitochondrion, peroxisome	55.5	64.09
CDX91717	Canola	mitochondrion	55.5	64.09
CDX89139	Canola	cytosol	55.5	64.09
CDX80083	Canola	cytosol	55.5	64.09
CDY47137	Canola	peroxisome	55.02	63.54
CDX75849	Canola	cytosol	34.93	63.48
CDX95712	Canola	cytosol	57.42	63.16
CDX83340	Canola	cytosol	57.42	62.83
CDX68343	Canola	cytosol	53.11	60.99
Solyc02g092970.2.1	Tomato	cytosol	55.02	60.21
CDX69567	Canola	mitochondrion	58.37	59.22
CDY09875	Canola	mitochondrion	57.89	56.81
CDY23500	Canola	cytosol	57.42	56.07
CDY16963	Canola	cytosol	47.85	52.08
CDX69406	Canola	cytosol	47.85	52.08
CDX68781	Canola	cytosol	44.98	51.65
CDY34756	Canola	cytosol	44.98	51.65
CDX75192	Canola	cytosol	44.98	51.65
CDY45596	Canola	cytosol	44.98	51.65
CDX76793	Canola	cytosol	44.98	51.65
CDY43149	Canola	cytosol	46.89	51.04
CDY28739	Canola	cytosol	46.89	51.04
CDY23463	Canola	cytosol	46.89	51.04
Bra036410.1-P	Field mustard	mitochondrion	100.0	49.76
CDY36172	Canola	cytosol	43.06	49.45
OQU85607	Sorghum	cytosol, mitochondrion	41.15	48.04
Zm00001d017650_P002	Maize	cytosol	40.19	47.19
CDY36874	Canola	cytosol	40.19	45.9
CDY53727	Canola	cytosol	39.71	45.36
CDY16265	Canola	cytosol	39.71	45.36
CDY29751	Canola	cytosol	39.23	44.81
CDY36479	Canola	cytosol	36.84	41.62
CDY29231	Canola	cytosol	36.84	41.62
CDY13039	Canola	cytosol	36.84	31.43
CDY38908	Canola	cytosol	26.79	27.32
CDY25962	Canola	mitochondrion	35.41	26.71
CDY31913	Canola	cytosol	25.84	26.21
CDY00519	Canola	cytosol	25.84	26.21
CDY32591	Canola	cytosol	26.79	22.13

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:A0A078C2E7	EnsemblPlants:CDX71216	ProteinID:CDX71216	ProteinID:CDX71216.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	EnsemblPlantsGene:GSBRNA2T00144789001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF297	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EE816A
SEG:seg	:	:	:	:	:

Description

BnaC07g04950D

Coordinates

chrLK031792:+:1265617..1268062

Molecular Weight (calculated)

23423.1 Da

IEP (calculated)

10.463

GRAVY (calculated)

-0.297

Length

209 amino acids

Sequence
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNSQGLIF VVDSSDSARL
101: SEARNELHRI LTNNELQNAC VLVFANKQDS RNALPVDQVA NNLGLHGLTK RCWFIQGTSA ITGQGLYEGL EWLSKTIPNK TERSSSLGSF RSDSSERRLV
201: RGVNLTDST

Best Arabidopsis Sequence Match ( AT2G15310.1 )
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNAQGLIF VVDSSDSERL
101: SEARNELHRI LTDNELEGAC VLVFANKQDS RNALPVAEVA NKLGLHSLSK RCWLIQGTSA ISGQGLYEGL EWLSTTIPNK PERSTSVSSF RSDSYERKLV
201: RGPRY

Arabidopsis Description

ATARFB1AProbable ADP-ribosylation factor At2g15310 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHU5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.