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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 3
  • peroxisome 1
  • endoplasmic reticulum 2
  • golgi 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:endoplasmic reticulum, golgi
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62290.1 CDY03088 AT2G01950.1 19000166
AT3G62290.1 CDY17621 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G62290.1 Thale cress cytosol 100.0 100.0
CDY27506 Canola cytosol 100.0 100.0
CDX89139 Canola cytosol 100.0 100.0
CDX80083 Canola cytosol 100.0 100.0
CDY51415 Canola cytosol 100.0 100.0
CDY53050 Canola cytosol 99.45 99.45
CDX93979 Canola mitochondrion, peroxisome 99.45 99.45
CDY47221 Canola mitochondrion 98.89 98.89
CDY41444 Canola mitochondrion 98.89 98.89
CDX91717 Canola mitochondrion 98.89 98.89
CDY47137 Canola peroxisome 98.89 98.89
CDY54291 Canola mitochondrion, peroxisome 98.34 98.34
CDY44152 Canola mitochondrion, peroxisome 98.34 98.34
CDY03747 Canola mitochondrion, peroxisome 98.34 98.34
CDY04706 Canola mitochondrion, peroxisome 98.34 98.34
CDY09441 Canola mitochondrion, peroxisome 98.34 98.34
CDY11588 Canola mitochondrion, peroxisome 98.34 98.34
CDY25787 Canola mitochondrion, peroxisome 98.34 98.34
GSMUA_Achr5P07760_001 Banana mitochondrion 97.79 97.79
CDX95712 Canola cytosol 99.45 94.74
CDX83340 Canola cytosol 98.89 93.72
CDX68343 Canola cytosol 91.16 90.66
CDX75849 Canola cytosol 56.91 89.57
CDX69567 Canola mitochondrion 97.79 85.92
CDY09875 Canola mitochondrion 97.79 83.1
CDY23500 Canola cytosol 90.61 76.64
CDX68781 Canola cytosol 60.22 59.89
CDX75192 Canola cytosol 60.22 59.89
CDY45596 Canola cytosol 59.67 59.34
CDX76793 Canola cytosol 59.67 59.34
CDY34756 Canola cytosol 59.67 59.34
CDY36172 Canola cytosol 57.46 57.14
CDY48224 Canola mitochondrion 64.09 56.59
CDX71216 Canola mitochondrion 64.09 55.5
CDY16963 Canola cytosol 58.56 55.21
CDX69406 Canola cytosol 58.56 55.21
CDY43149 Canola cytosol 58.56 55.21
CDY28739 Canola cytosol 58.56 55.21
CDY23463 Canola cytosol 58.56 55.21
CDY53727 Canola cytosol 53.04 52.46
CDY36874 Canola cytosol 52.49 51.91
CDY29751 Canola cytosol 52.49 51.91
CDY16265 Canola cytosol 52.49 51.91
CDY36479 Canola cytosol 48.07 47.03
CDY29231 Canola cytosol 48.07 47.03
CDY13039 Canola cytosol 48.07 35.51
CDY25962 Canola mitochondrion 52.49 34.3
CDY31913 Canola cytosol 35.36 31.07
CDY38908 Canola cytosol 34.81 30.73
CDY00519 Canola cytosol 34.81 30.58
CDY32591 Canola cytosol 34.81 24.9
Protein Annotations
MapMan:22.3.2.1Gene3D:3.40.50.300GO:A0A078GQB8UniProt:A0A078GQB8ProteinID:CDY27506.1EnsemblPlants:CDY37791
ProteinID:CDY37791ProteinID:CDY37791.1ProteinID:CDY51415.1GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773
GO:GO:0005794GO:GO:0007154GO:GO:0007165GO:GO:0007264GO:GO:0008150GO:GO:0009506
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00064726001InterPro:IPR024156InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328
PFscan:PS51417PANTHER:PTHR11711PANTHER:PTHR11711:SF182SMART:SM00175SMART:SM00177SMART:SM00178
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARFInterPro:Small_GTPase_ARF/SARTIGRFAMs:TIGR00231UniParc:UPI00000A4A38
Description
BnaC04g00340DBnaA04g00470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQB8]
Coordinates
chrLK032408:+:204891..207083
Molecular Weight (calculated)
20608.8 Da
IEP (calculated)
6.960
GRAVY (calculated)
-0.217
Length
181 amino acids
Sequence
(BLAST)
001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A
Best Arabidopsis Sequence Match ( AT3G62290.2 )
(BLAST)
001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A
Arabidopsis Description
ARFA1EADP-ribosylation factor A1E [Source:UniProtKB/TrEMBL;Acc:Q9M1P5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.