CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00519	Canola	cytosol	99.51	99.51
CDY38908	Canola	cytosol	94.66	95.12
AT5G52210.2	Thale cress	cytosol	94.17	94.63
KRH11380	Soybean	endoplasmic reticulum	79.13	79.9
Solyc10g074630.1.1	Tomato	cytosol	74.76	79.79
KRH20906	Soybean	endoplasmic reticulum	78.16	78.92
GSMUA_Achr11P...	Banana	endoplasmic reticulum	77.18	78.33
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	77.67	78.05
GSMUA_Achr5P00190_001	Banana	extracellular	76.21	77.34
CDY32591	Canola	cytosol	94.66	77.08
Os03t0392300-01	Rice	cytosol	72.82	73.89
EER99714	Sorghum	cytosol	71.36	72.41
TraesCS1A01G069400.1	Wheat	peroxisome	71.36	72.41
TraesCS1D01G072000.1	Wheat	peroxisome	70.87	71.92
Os07t0620400-01	Rice	cytosol	70.87	71.92
TraesCS1B01G087700.1	Wheat	peroxisome	69.9	71.29
HORVU1Hr1G014610.1	Barley	cytosol	69.42	70.44
Zm00001d029408_P001	Maize	endoplasmic reticulum	68.93	70.3
EER94751	Sorghum	cytosol	68.45	69.8
VIT_00s0189g00080.t01	Wine grape	cytosol	50.0	69.13
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	43.69	68.7
TraesCS2D01G172000.1	Wheat	peroxisome	63.59	65.83
Zm00001d022172_P001	Maize	golgi, peroxisome	71.36	62.55
PGSC0003DMT400043326	Potato	cytosol	68.93	59.92
TraesCS2B01G191100.2	Wheat	cytosol, plastid	60.19	57.94
CDX80083	Canola	cytosol	31.07	35.36
CDY47137	Canola	peroxisome	31.07	35.36
CDY47221	Canola	mitochondrion	31.07	35.36
CDY44152	Canola	mitochondrion, peroxisome	31.07	35.36
CDY51415	Canola	cytosol	31.07	35.36
CDY41444	Canola	mitochondrion	31.07	35.36
CDY37791	Canola	cytosol	31.07	35.36
CDY53050	Canola	cytosol	31.07	35.36
CDY54291	Canola	mitochondrion, peroxisome	31.07	35.36
CDX89139	Canola	cytosol	31.07	35.36
CDX91717	Canola	mitochondrion	31.07	35.36
CDX93979	Canola	mitochondrion, peroxisome	31.07	35.36
CDY03747	Canola	mitochondrion, peroxisome	31.07	35.36
CDY04706	Canola	mitochondrion, peroxisome	31.07	35.36
CDY27506	Canola	cytosol	31.07	35.36
CDY09441	Canola	mitochondrion, peroxisome	31.07	35.36
CDY25787	Canola	mitochondrion, peroxisome	31.07	35.36
CDY11588	Canola	mitochondrion, peroxisome	31.07	35.36
CDX68343	Canola	cytosol	31.07	35.16
CDX68781	Canola	cytosol	30.58	34.62
CDX75192	Canola	cytosol	30.58	34.62
CDY29231	Canola	cytosol	31.07	34.59
CDY36479	Canola	cytosol	31.07	34.59
CDY34756	Canola	cytosol	30.1	34.07
CDY45596	Canola	cytosol	30.1	34.07
CDX76793	Canola	cytosol	30.1	34.07
CDY53727	Canola	cytosol	30.1	33.88
CDY36874	Canola	cytosol	29.61	33.33
CDY16265	Canola	cytosol	29.61	33.33
CDX95712	Canola	cytosol	30.58	33.16
CDY29751	Canola	cytosol	29.13	32.79
CDX83340	Canola	cytosol	30.1	32.46
CDY36172	Canola	cytosol	28.64	32.42
CDX75849	Canola	cytosol	17.96	32.17
CDX69406	Canola	cytosol	29.13	31.25
CDY16963	Canola	cytosol	29.13	31.25
CDY23500	Canola	cytosol	32.04	30.84
CDY23463	Canola	cytosol	28.64	30.73
CDY28739	Canola	cytosol	28.64	30.73
CDY43149	Canola	cytosol	28.64	30.73
CDX69567	Canola	mitochondrion	30.58	30.58
CDY09875	Canola	mitochondrion	30.58	29.58
CDY48224	Canola	mitochondrion	26.21	26.34
CDY13039	Canola	cytosol	31.07	26.12
CDX71216	Canola	mitochondrion	26.21	25.84
CDY25962	Canola	mitochondrion	18.45	13.72

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078H4X5	UniProt:A0A078H4X5	EnsemblPlants:CDY31913	ProteinID:CDY31913
ProteinID:CDY31913.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00050669001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF218	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EE7749	:	:

Description

BnaC09g28310DBnaC09g28310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4X5]

Coordinates

chrLK032282:-:196898..198531

Molecular Weight (calculated)

23292.1 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.175

Length

206 amino acids

Sequence
(BLAST)

001: MFSLMHGLWT YMFSKTEFHV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVANAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPSRFEDS KSALEKALRH EDLQGAPLLI LANKQQDLPN AVSAEELDRY LDLKKLDERV YMFEAASGYD GRGIKESIEW LVGVMERSKR TEALRARAGY
201: VPVPTS

Best Arabidopsis Sequence Match ( AT5G52210.2 )
(BLAST)

001: MFSLMSGLWS YMFSKTEFNV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVSNAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPTRFEDS KSALEKALRH EDLQGAPLLI LANKQDLTNA VSAEELDRYL DLKKLDERVY MFEAVSGYDG RGIKESIEWL VGVMEKSKRT ESLRARAGYT
201: PVPNS

Arabidopsis Description

ATARLB1At5g52210 [Source:UniProtKB/TrEMBL;Acc:Q38921]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.