CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0620400-01	Rice	cytosol	89.16	89.16
TraesCS1A01G069400.1	Wheat	peroxisome	85.22	85.22
HORVU1Hr1G014610.1	Barley	cytosol	85.22	85.22
TraesCS1B01G087700.1	Wheat	peroxisome	84.73	85.15
Zm00001d022172_P001	Maize	golgi, peroxisome	98.52	85.11
TraesCS1D01G072000.1	Wheat	peroxisome	84.73	84.73
TraesCS2D01G172000.1	Wheat	peroxisome	78.82	80.4
EER94751	Sorghum	cytosol	76.35	76.73
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.35	76.35
GSMUA_Achr5P00190_001	Banana	extracellular	73.89	73.89
KRH11380	Soybean	endoplasmic reticulum	73.4	73.04
KRH20906	Soybean	endoplasmic reticulum	72.41	72.06
Solyc10g074630.1.1	Tomato	cytosol	67.98	71.5
CDY00519	Canola	cytosol	72.41	71.36
CDY31913	Canola	cytosol	72.41	71.36
Bra028298.1-P	Field mustard	cytosol	70.44	71.14
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	71.43	70.73
CDY38908	Canola	cytosol	70.94	70.24
Bra029132.1-P	Field mustard	cytosol	68.97	69.65
AT5G52210.2	Thale cress	cytosol	69.46	68.78
TraesCS2B01G191100.2	Wheat	cytosol, plastid	72.41	68.69
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	40.89	63.36
VIT_00s0189g00080.t01	Wine grape	cytosol	42.36	57.72
CDY32591	Canola	cytosol	70.94	56.92
PGSC0003DMT400043326	Potato	cytosol	62.56	53.59
EER96075	Sorghum	mitochondrion	31.53	35.36
EER93218	Sorghum	mitochondrion	31.53	35.36
EES19719	Sorghum	mitochondrion	31.03	34.81
EES08754	Sorghum	cytosol, mitochondrion	31.53	34.78
EES14799	Sorghum	cytosol, mitochondrion	31.03	34.62
EES06219	Sorghum	mitochondrion	31.53	32.99
EES07411	Sorghum	cytosol	31.53	32.99
KXG37868	Sorghum	cytosol	30.05	32.97
OQU85607	Sorghum	cytosol, mitochondrion	29.06	32.96
EER94416	Sorghum	cytosol	30.54	31.96
EER89435	Sorghum	cytosol	26.6	28.57
OQU87737	Sorghum	cytosol	31.03	23.77
OQU86657	Sorghum	peroxisome, plastid	31.53	20.85

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8079209	UniProt:C5X2G4	EnsemblPlants:EER99714	ProteinID:EER99714
ProteinID:EER99714.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF218	SMART:SM00175	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3002G378300
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001A83E22
RefSeq:XP_002463193.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:73477758..73481218

Molecular Weight (calculated)

22824.4 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.225

Length

203 amino acids

Sequence
(BLAST)

001: MFSLFYGLWK HVFSKTEFHV LILGVHKSGK TTLLEKLKSI YLKGEGLPHD RIVPTVGLNI GRIEDANVKL VFWDLGGQPG LRTIWEKYYE EAHAVIYVID
101: SASASSFEDA KSALEKVLRH EDLHGAPILI FANKQDSPAA VTEEELARHL HLKELDERPC MFQAGSAFDG TGIKHGVDWL VEEMERSKRT EALRARTEAA
201: GKI

Best Arabidopsis Sequence Match ( AT5G52210.2 )
(BLAST)

001: MFSLMSGLWS YMFSKTEFNV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVSNAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPTRFEDS KSALEKALRH EDLQGAPLLI LANKQDLTNA VSAEELDRYL DLKKLDERVY MFEAVSGYDG RGIKESIEWL VGVMEKSKRT ESLRARAGYT
201: PVPNS

Arabidopsis Description

ATARLB1At5g52210 [Source:UniProtKB/TrEMBL;Acc:Q38921]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.