CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030157_P001	Maize	extracellular	99.48	99.48
Os10t0580200-01	Rice	plasma membrane	97.94	98.96
TraesCS1D01G201300.1	Wheat	cytosol	94.85	96.34
TraesCS1B01G212500.1	Wheat	cytosol	94.85	96.34
TraesCS1A01G197800.1	Wheat	golgi	94.85	96.34
HORVU1Hr1G051350.1	Barley	cytosol	94.85	96.34
GSMUA_Achr5P03700_001	Banana	cytosol	89.69	89.69
GSMUA_Achr4P27450_001	Banana	cytosol	88.66	88.66
EES07411	Sorghum	cytosol	88.66	88.66
EES06219	Sorghum	mitochondrion	76.29	76.29
EER89435	Sorghum	cytosol	67.01	68.78
EES19719	Sorghum	mitochondrion	56.19	60.22
EER96075	Sorghum	mitochondrion	56.19	60.22
EER93218	Sorghum	mitochondrion	55.67	59.67
EES14799	Sorghum	cytosol, mitochondrion	51.03	54.4
OQU85607	Sorghum	cytosol, mitochondrion	42.78	46.37
EES08754	Sorghum	cytosol, mitochondrion	42.78	45.11
OQU87737	Sorghum	cytosol	56.19	41.13
KXG37868	Sorghum	cytosol	39.18	41.08
OQU86657	Sorghum	peroxisome, plastid	55.67	35.18
EER99714	Sorghum	cytosol	31.96	30.54
EER94751	Sorghum	cytosol	30.93	29.7

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:8086279	UniProt:C5WQM0	EnsemblPlants:EER94416	ProteinID:EER94416
ProteinID:EER94416.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3001G281900	SUPFAM:SSF52540
unigene:Sbi.5686	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001A82DE3
RefSeq:XP_002467418.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:55295759..55299089

Molecular Weight (calculated)

21794.4 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.028

Length

194 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFFGNKEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRPLWRH YFNNTDALIY VVDSLDRERI
101: GRARAEFQAI INDPFMLNSV LLVFANKQDM RGAMTPMEVC EGLGLYDLTN RIWHIQGTCA LKGDGLYEGL DWLATTLDEM RASGRITSAS SSAS

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.