Factsheet for Zm00001d030157_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94416	Sorghum	cytosol	99.48	99.48
Os10t0580200-01	Rice	plasma membrane	97.42	98.44
HORVU1Hr1G051350.1	Barley	cytosol	95.36	96.86
TraesCS1A01G197800.1	Wheat	golgi	95.36	96.86
TraesCS1B01G212500.1	Wheat	cytosol	95.36	96.86
TraesCS1D01G201300.1	Wheat	cytosol	95.36	96.86
GSMUA_Achr5P03700_001	Banana	cytosol	89.69	89.69
GSMUA_Achr4P27450_001	Banana	cytosol	88.66	88.66
Zm00001d051546_P001	Maize	cytosol	87.63	87.63
Zm00001d017717_P001	Maize	cytosol	87.63	76.92
Zm00001d015121_P002	Maize	mitochondrion	75.26	75.26
Zm00001d044868_P001	Maize	cytosol	67.53	69.31
Zm00001d038533_P001	Maize	plastid	56.7	59.78
Zm00001d043113_P001	Maize	plastid	56.19	59.56
Zm00001d008295_P002	Maize	plastid	55.15	59.12
Zm00001d005231_P006	Maize	cytosol	56.19	58.6
Zm00001d019191_P007	Maize	peroxisome	56.19	54.77
Zm00001d013007_P001	Maize	plastid	55.67	53.2
Zm00001d023657_P001	Maize	cytosol	11.86	48.94
Zm00001d017650_P002	Maize	cytosol	41.75	45.51
Zm00001d012537_P003	Maize	cytosol	47.42	45.32
Zm00001d052978_P001	Maize	extracellular	42.78	45.11
Zm00001d033414_P001	Maize	extracellular	39.18	29.92
Zm00001d029408_P001	Maize	endoplasmic reticulum	30.93	29.7
Zm00001d022172_P001	Maize	golgi, peroxisome	32.47	26.81

Protein Annotations

EntrezGene:100192068	MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:B6TGE5	EMBL:BT087834	EMBL:EU964060
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	ProteinID:ONM00407.1	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000182DEDD
EnsemblPlantsGene:Zm00001d030157	EnsemblPlants:Zm00001d030157_P001	EnsemblPlants:Zm00001d030157_T001	SEG:seg	:	:

Description

ADP-ribosylation factor B1B

Coordinates

chr1:-:109410589..109413669

Molecular Weight (calculated)

21794.4 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.031

Length

194 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFFGNKEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRPLWRH YFNNTDALIY VVDSLDRERI
101: GRARAEFQAI INDPFMLNSV LLVFANKQDM RGAMTPMEVC EGLGLYDLTN RIWHIQGTCA LKGDGLYEGL DWLATTLDEM RASGRLTSAS SSAS

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.