Factsheet for Zm00001d013007_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18521681
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18521681 doi

P Carletti, A Masi, B Spolaore, P Polverino De Laureto, M De Zorzi, L Turetta, M Ferretti, S Nardi

Department of Agricultural Biotechnology, University of Padua, Agripolis, Strada Romea, 16-35020 Legnaro, Padova, Italy.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93218	Sorghum	mitochondrion	88.67	99.45
Zm00001d023657_P001	Maize	cytosol	22.66	97.87
VIT_14s0066g01080.t01	Wine grape	mitochondrion	86.7	97.24
KRH56584	Soybean	mitochondrion	86.7	97.24
KRG93262	Soybean	nucleus	86.7	97.24
Zm00001d008295_P002	Maize	plastid	86.7	97.24
Bra016344.1-P	Field mustard	mitochondrion	86.21	96.69
PGSC0003DMT400003226	Potato	mitochondrion	86.21	96.69
CDX91717	Canola	mitochondrion	86.21	96.69
CDY03747	Canola	mitochondrion, peroxisome	86.21	96.69
CDY04706	Canola	mitochondrion, peroxisome	86.21	96.69
CDY09441	Canola	mitochondrion, peroxisome	86.21	96.69
CDY11588	Canola	mitochondrion, peroxisome	86.21	96.69
AT1G23490.1	Thale cress	mitochondrion, peroxisome	86.21	96.69
CDY25787	Canola	mitochondrion, peroxisome	86.21	96.69
CDY41444	Canola	mitochondrion	86.21	96.69
CDY44152	Canola	mitochondrion, peroxisome	86.21	96.69
AT1G10630.2	Thale cress	mitochondrion	86.21	96.69
CDY54291	Canola	mitochondrion, peroxisome	86.21	96.69
AT1G70490.4	Thale cress	mitochondrion, peroxisome	86.21	96.69
AT2G47170.2	Thale cress	mitochondrion	86.21	96.69
Bra024604.1-P	Field mustard	mitochondrion	85.71	96.13
CDY47137	Canola	peroxisome	85.71	96.13
Zm00001d005231_P006	Maize	cytosol	87.19	95.16
Zm00001d038533_P001	Maize	plastid	86.21	95.11
Zm00001d043113_P001	Maize	plastid	85.71	95.08
Bra012376.1-P	Field mustard	cytosol	86.21	93.09
KRH36902	Soybean	endoplasmic reticulum	82.76	91.3
Zm00001d019191_P007	Maize	peroxisome	88.18	89.95
CDX68343	Canola	cytosol	80.3	89.56
Bra003954.1-P	Field mustard	cytosol	79.8	89.5
TraesCS5B01G479100.1	Wheat	golgi	91.63	88.15
TraesCS5A01G467400.1	Wheat	cytosol	90.64	87.2
TraesCS5D01G480200.1	Wheat	unclear	90.64	87.2
HORVU5Hr1G111500.2	Barley	mitochondrion	88.18	76.5
CDY23500	Canola	cytosol	79.8	75.7
Zm00001d012537_P003	Maize	cytosol	69.46	69.46
Zm00001d017650_P002	Maize	cytosol	49.26	56.18
Zm00001d030157_P001	Maize	extracellular	53.2	55.67
Zm00001d051546_P001	Maize	cytosol	51.23	53.61
Zm00001d052978_P001	Maize	extracellular	46.31	51.09
Zm00001d015121_P002	Maize	mitochondrion	48.28	50.52
Zm00001d044868_P001	Maize	cytosol	46.31	49.74
Zm00001d017717_P001	Maize	cytosol	51.23	47.06
Zm00001d033414_P001	Maize	extracellular	44.34	35.43
Zm00001d029408_P001	Maize	endoplasmic reticulum	31.53	31.68
Zm00001d022172_P001	Maize	golgi, peroxisome	32.02	27.66

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A1D6GEU6	ProteinID:AQK62098.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0016192	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI000844A98F	EnsemblPlantsGene:Zm00001d013007	EnsemblPlants:Zm00001d013007_P001	EnsemblPlants:Zm00001d013007_T001	:	:

Description

ADP-ribosylation factor homolog1 ADP-ribosylation factor homolog1

Coordinates

chr5:-:3149161..3151741

Molecular Weight (calculated)

23161.8 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.303

Length

203 amino acids

Sequence
(BLAST)

001: MRGMDRRPDD LGFVSAAGER EEMGLTFTKL FSRLFAKKEM RILMVGLDAA GKTTILYKLK LGEIVTTIPT IGFNVETVEY KNISFTVWDV GGQDKIRPLW
101: RHYFQNTQGL IFVVDSNDRD RVVEARDELH RMLNEDELRD AVLLVFANKQ DLPNAMNAAE ITDKLGLHSL RQRHWYIQST CATTGEGLYE GLDWLSSNIA
201: TKS

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.