Factsheet for Bra003954.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 2
peroxisome 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68343	Canola	cytosol	98.89	98.35
Bra024604.1-P	Field mustard	mitochondrion	91.71	91.71
Bra016344.1-P	Field mustard	mitochondrion	91.71	91.71
Bra004475.1-P	Field mustard	cytosol	91.16	91.16
VIT_14s0066g01080.t01	Wine grape	mitochondrion	91.16	91.16
TraesCS2A01G235500.1	Wheat	golgi, plastid	90.61	90.61
PGSC0003DMT400003226	Potato	mitochondrion	90.61	90.61
Bra014403.1-P	Field mustard	cytosol	90.61	90.61
GSMUA_Achr2P11590_001	Banana	mitochondrion	90.61	90.61
Bra027153.1-P	Field mustard	cytosol	90.61	90.61
Os07t0223400-01	Rice	mitochondrion	90.06	90.06
Os07t0223100-01	Rice	plasma membrane	90.06	90.06
Bra016215.1-P	Field mustard	cytosol	90.06	90.06
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	90.06	90.06
Os03t0811900-01	Rice	plasma membrane	90.06	90.06
Bra021387.1-P	Field mustard	cytosol	90.06	90.06
EER96075	Sorghum	mitochondrion	90.06	90.06
EER93218	Sorghum	mitochondrion	89.5	89.5
GSMUA_Achr10P...	Banana	cytosol	81.77	89.16
GSMUA_Achr7P18350_001	Banana	cytosol	81.22	88.55
Bra012376.1-P	Field mustard	cytosol	91.71	88.3
KRH36902	Soybean	endoplasmic reticulum	89.5	88.04
Zm00001d023657_P001	Maize	cytosol	22.65	87.23
Zm00001d005231_P006	Maize	cytosol	89.5	87.1
Bra008746.1-P	Field mustard	mitochondrion	90.61	86.77
Bra000443.1-P	Field mustard	cytosol	89.5	84.38
GSMUA_Achr11P...	Banana	cytosol	90.61	82.0
Zm00001d019191_P007	Maize	peroxisome	90.06	81.91
Bra007917.1-P	Field mustard	cytosol	67.4	81.33
Zm00001d013007_P001	Maize	plastid	89.5	79.8
TraesCS5D01G480200.1	Wheat	unclear	89.5	76.78
TraesCS5B01G479100.1	Wheat	golgi	89.5	76.78
TraesCS5A01G467400.1	Wheat	cytosol	89.5	76.78
HORVU5Hr1G111500.2	Barley	mitochondrion	89.5	69.23
GSMUA_Achr3P18390_001	Banana	plasma membrane	91.16	68.18
Zm00001d012537_P003	Maize	cytosol	70.72	63.05
Bra011295.1-P	Field mustard	cytosol	59.12	58.79
Bra007833.1-P	Field mustard	cytosol	58.56	58.24
Bra032062.1-P	Field mustard	cytosol	58.56	58.24
Bra032015.1-P	Field mustard	cytosol	55.8	52.6
Bra021371.1-P	Field mustard	cytosol	55.8	52.6
Bra008579.1-P	Field mustard	cytosol	55.25	52.08
GSMUA_Achr6P08570_001	Banana	cytosol	90.61	51.09
Bra039725.1-P	Field mustard	cytosol	51.38	50.82
Bra036878.1-P	Field mustard	cytosol	50.83	50.27
Bra039613.1-P	Field mustard	cytosol	44.2	43.24
Bra024470.1-P	Field mustard	cytosol	43.09	42.16
Bra029132.1-P	Field mustard	cytosol	34.81	31.34
Bra028298.1-P	Field mustard	cytosol	34.25	30.85
Bra036410.1-P	Field mustard	mitochondrion	60.77	26.19

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra003954	EnsemblPlants:Bra003954.1	EnsemblPlants:Bra003954.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4CIC1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF182	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00025418F9	:	:	:

Description

AT1G70490 (E=6e-095) ATARFA1D, ARFA1D | ARFA1D; GTP binding / phospholipase activator/ protein binding

Coordinates

chrA07:+:15941507..15947777

Molecular Weight (calculated)

20584.9 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.158

Length

181 amino acids

Sequence
(BLAST)

001: MGLGFAKLVS SLFAKKEMRL LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYRN ISFTVWDVGG QDKIRPLWKY YFQNTQGLIF VVDSNDRDRI
101: AEARDELHRM LNEDELRDAV LLLFANKQDL PIAMNAAEIT DKLGLHTLRQ RHWYIQSTCA TSGEGLYEGL EWLSNNIRGK A

Best Arabidopsis Sequence Match ( AT1G70490.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A

Arabidopsis Description

ARF2-AADP-ribosylation factor 2-B [Source:UniProtKB/Swiss-Prot;Acc:P0DH91]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.