Factsheet for Bra032015.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28739	Canola	cytosol	100.0	100.0
CDY43149	Canola	cytosol	100.0	100.0
Bra021371.1-P	Field mustard	cytosol	97.4	97.4
AT3G03120.1	Thale cress	cytosol	95.83	95.83
Solyc06g072800.2.1	Tomato	cytosol	64.58	93.94
Bra008579.1-P	Field mustard	cytosol	93.75	93.75
Solyc03g096910.2.1	Tomato	cytosol	63.54	92.42
KRH27742	Soybean	cytosol	90.1	89.64
VIT_16s0039g02240.t01	Wine grape	cytosol	90.1	89.64
KRH77702	Soybean	cytosol	81.77	89.2
PGSC0003DMT400001454	Potato	cytosol	89.58	89.12
PGSC0003DMT400069538	Potato	cytosol	89.58	89.12
KRH29023	Soybean	cytosol	89.58	88.21
KRH24049	Soybean	cytosol	89.06	87.69
TraesCS6A01G268000.1	Wheat	cytosol	86.98	87.43
TraesCS6D01G246900.1	Wheat	cytosol	86.46	86.91
EES07411	Sorghum	cytosol	86.46	85.57
Zm00001d051546_P001	Maize	cytosol	85.42	84.54
GSMUA_AchrUn_...	Banana	cytosol	79.69	82.26
GSMUA_Achr7P04780_001	Banana	cytosol	80.21	81.91
Os02t0699300-01	Rice	cytosol, extracellular, plastid	48.96	75.81
Zm00001d017717_P001	Maize	cytosol	86.46	75.11
HORVU6Hr1G067840.2	Barley	cytosol	86.98	59.86
Bra027153.1-P	Field mustard	cytosol	55.21	58.56
Bra024604.1-P	Field mustard	mitochondrion	55.21	58.56
Bra021387.1-P	Field mustard	cytosol	55.21	58.56
Bra016344.1-P	Field mustard	mitochondrion	55.21	58.56
Bra004475.1-P	Field mustard	cytosol	55.21	58.56
TraesCS6B01G295200.1	Wheat	plastid	75.0	58.54
Bra016215.1-P	Field mustard	cytosol	54.69	58.01
Bra014403.1-P	Field mustard	cytosol	54.69	58.01
Bra011295.1-P	Field mustard	cytosol	54.17	57.14
Bra032062.1-P	Field mustard	cytosol	53.65	56.59
Bra007833.1-P	Field mustard	cytosol	53.65	56.59
Bra012376.1-P	Field mustard	cytosol	55.21	56.38
Bra000443.1-P	Field mustard	cytosol	56.25	56.25
Bra003954.1-P	Field mustard	cytosol	52.6	55.8
Bra008746.1-P	Field mustard	mitochondrion	54.69	55.56
Bra007917.1-P	Field mustard	cytosol	39.06	50.0
Bra036878.1-P	Field mustard	cytosol	45.31	47.54
Bra039725.1-P	Field mustard	cytosol	44.79	46.99
Bra039613.1-P	Field mustard	cytosol	39.58	41.08
Bra024470.1-P	Field mustard	cytosol	38.54	40.0
Bra028298.1-P	Field mustard	cytosol	30.21	28.86
Bra029132.1-P	Field mustard	cytosol	29.69	28.36
Bra036410.1-P	Field mustard	mitochondrion	51.04	23.33

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra032015	EnsemblPlants:Bra032015.1	EnsemblPlants:Bra032015.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4ET85	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000254615E	:	:	:

Description

AT3G03120 (E=1e-106) ATARFB1C | ATARFB1C (ADP-ribosylation factor B1C); GTP binding

Coordinates

chrA02:+:26654853..26656274

Molecular Weight (calculated)

21774.5 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.134

Length

192 amino acids

Sequence
(BLAST)

001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSSTLKEV RAAGFSSAGP LF

Best Arabidopsis Sequence Match ( AT3G03120.1 )
(BLAST)

001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSATLKEV KAAGYSSVGP SF

Arabidopsis Description

ATARFB1CATARFB1C [Source:UniProtKB/TrEMBL;Acc:A0A178VH47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.