Factsheet for Os10t0580200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94416	Sorghum	cytosol	98.96	97.94
Zm00001d030157_P001	Maize	extracellular	98.44	97.42
HORVU1Hr1G051350.1	Barley	cytosol	96.88	97.38
TraesCS1D01G201300.1	Wheat	cytosol	96.88	97.38
TraesCS1B01G212500.1	Wheat	cytosol	96.88	97.38
TraesCS1A01G197800.1	Wheat	golgi	96.88	97.38
GSMUA_Achr5P03700_001	Banana	cytosol	90.62	89.69
GSMUA_Achr4P27450_001	Banana	cytosol	89.58	88.66
Os02t0128600-01	Rice	mitochondrion	77.6	76.8
Os02t0699300-01	Rice	cytosol, extracellular, plastid	48.44	75.0
Os06t0114200-00	Rice	plasma membrane	70.31	71.43
Os05t0489600-03	Rice	plasma membrane	56.77	60.22
Os07t0223100-01	Rice	plasma membrane	56.77	60.22
Os07t0223400-01	Rice	mitochondrion	56.77	60.22
Os01t0813400-01	Rice	plasma membrane	56.77	60.22
Os03t0811900-01	Rice	plasma membrane	56.25	59.67
Os01t0265100-01	Rice	plasma membrane, plastid	56.25	59.67
Os08t0248900-01	Rice	nucleus, plasma membrane	51.04	53.85
Os11t0586900-02	Rice	cytosol	43.75	45.65
Os02t0327100-01	Rice	cytosol	38.54	40.0
Os07t0620400-01	Rice	cytosol	32.81	31.03
Os03t0392300-01	Rice	cytosol	31.25	29.56

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EntrezGene:4349518	ProteinID:AAG46163.1	ProteinID:ABB48042.2	EMBL:AK068771
EMBL:AK070151	ProteinID:BAF27348.1	ProteinID:BAT12248.1	ProteinID:EAZ17109.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156
EnsemblPlantsGene:Os10g0580200	EnsemblPlants:Os10t0580200-01	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	UniProt:Q336M3	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00000A3AC3	RefSeq:XP_015614384.1

Description

ADP-RIBOSYLATION FACTOR B1CSimilar to ADP-ribosylation factor-like protein. (Os10t0580200-01);Similar to ADP-ribosylation factor-like protein. (Os10t0580200-02)

Coordinates

chr10:+:23146494..23148598

Molecular Weight (calculated)

21679.3 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.061

Length

192 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFFGNKEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRPLWRH YFNNTDALIY VVDSLDRERI
101: GRARAEFQAI INDPFMLNSV LLVFANKQDM RGAMTPMEVC EGLGLYDLNN RIWHIQGTCA LKGDGLYEGL DWLATTLDEM RASGRITSTS SS

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.