Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g006640.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66030.1 | Solyc07g006640.2.1 | AT2G24765.1 | 16236155 |
| AT5G66030.1 | Solyc07g006640.2.1 | AT2G24765.1 | 16830178 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28898 | Soybean | cytosol | 13.48 | 81.68 |
| HORVU2Hr1G059110.2 | Barley | cytosol | 11.84 | 71.21 |
| VIT_04s0210g00200.t01 | Wine grape | cytosol | 65.87 | 65.54 |
| KRH76555 | Soybean | cytosol | 64.23 | 64.31 |
| KRH28897 | Soybean | cytosol | 51.26 | 61.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.68 | 61.0 |
| AT5G66030.1 | Thale cress | nucleus | 57.56 | 57.99 |
| KXG36201 | Sorghum | cytosol | 51.39 | 52.71 |
| Os07t0472500-01 | Rice | nucleus | 51.89 | 51.82 |
| TraesCS2D01G238300.1 | Wheat | mitochondrion | 51.64 | 50.55 |
| TraesCS2B01G259500.1 | Wheat | mitochondrion | 51.64 | 50.55 |
| TraesCS2A01G234700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 51.51 | 50.43 |
| HORVU2Hr1G059170.7 | Barley | mitochondrion | 50.88 | 49.81 |
| Zm00001d006357_P001 | Maize | cytosol | 46.98 | 48.01 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi, vacuole | 20.78 | 46.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.18 | 39.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.36 | 32.66 |
Protein Annotations
| MapMan:22.6.7.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000795 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:GRIP_dom | InterPro:IPR000237 | UniProt:K4BAF4 | PFAM:PF01465 | PFscan:PS50913 |
| PANTHER:PTHR23160 | PANTHER:PTHR23160:SF10 | SMART:SM00755 | EnsemblPlantsGene:Solyc02g082840.2 | EnsemblPlants:Solyc02g082840.2.1 | UniParc:UPI00027682C3 |
| SEG:seg | : | : | : | : | : |
Description
Protein GRIP [Source:Projected from Arabidopsis thaliana (AT5G66030) UniProtKB/Swiss-Prot;Acc:Q8S2T0]
Coordinates
chr2:-:46481418..46492724
Molecular Weight (calculated)
90598.3 Da
IEP (calculated)
4.718
GRAVY (calculated)
-0.912
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDISSGAA DNHTEDASKT EAQFNSFNIE SDHVKDNGIC ESHEHTGDSH DDLVQMLVEL NFQNEYLKSQ IVGWQSINIY SDDSGQQIKT AAHENVASDN
101: SEDLNEKIES LNRELLEEKQ TRGAAEVALK HLQTLYLEAD TKAQELSVKV AEVQNKMDQE IKERDEKYSE LDSKFNRLHK RAKQRIQEVQ KEKDDLEAQF
201: RDVNEKSERA SSQLSALQQE LERSRQHAQE ALKAMDLDRQ QLRSTNNKLR DNIEELRRSL APKENALEAS QQALLEKEQK LEEMQALLQA ADEKRQASIE
301: DLSSKHQKQK ESLEAQIAEA LAERSKAAET ISSLRTVVAE KEFKIAEMDA ASTGEAARLR AAFETVKGDI VHLKSEQEKE KESWETTCHS LRTKLEIAES
401: NCIRAEIEAA KFRSQLESQL SAQSQVLNSK EAELMAAKEE INRTQSEFSS YKARAHALLQ RKDAELAAAR DSEQLKALEE ALKEVEKEVM SVSSERDRAL
501: QDLKSTLINH EKELSDRDEA LRATEQRIRS MEMKFNSAIS AHQKEKEAWE ISLQNVEETW RLKCDAFKAE SVVTSGDNVQ KELDDLKQSC KKLKEELDSF
601: RDLADKMIEE KDNEISRLLD DNENLRHKLQ SEFLADRNGN SNTVYDKQDP LNSTTSAADQ QILVLARQQA QREEELAQSQ RHILALQEEI EELERENRLH
701: SQQEAKLKEE LRNMDRSQKR EGVDLTYLKN VILKLLETGE VEALLPVVAM LLQFSPEEMR KCQQAYRSSI EAQASPSKDT SGSGSSLFSR FSFS
101: SEDLNEKIES LNRELLEEKQ TRGAAEVALK HLQTLYLEAD TKAQELSVKV AEVQNKMDQE IKERDEKYSE LDSKFNRLHK RAKQRIQEVQ KEKDDLEAQF
201: RDVNEKSERA SSQLSALQQE LERSRQHAQE ALKAMDLDRQ QLRSTNNKLR DNIEELRRSL APKENALEAS QQALLEKEQK LEEMQALLQA ADEKRQASIE
301: DLSSKHQKQK ESLEAQIAEA LAERSKAAET ISSLRTVVAE KEFKIAEMDA ASTGEAARLR AAFETVKGDI VHLKSEQEKE KESWETTCHS LRTKLEIAES
401: NCIRAEIEAA KFRSQLESQL SAQSQVLNSK EAELMAAKEE INRTQSEFSS YKARAHALLQ RKDAELAAAR DSEQLKALEE ALKEVEKEVM SVSSERDRAL
501: QDLKSTLINH EKELSDRDEA LRATEQRIRS MEMKFNSAIS AHQKEKEAWE ISLQNVEETW RLKCDAFKAE SVVTSGDNVQ KELDDLKQSC KKLKEELDSF
601: RDLADKMIEE KDNEISRLLD DNENLRHKLQ SEFLADRNGN SNTVYDKQDP LNSTTSAADQ QILVLARQQA QREEELAQSQ RHILALQEEI EELERENRLH
701: SQQEAKLKEE LRNMDRSQKR EGVDLTYLKN VILKLLETGE VEALLPVVAM LLQFSPEEMR KCQQAYRSSI EAQASPSKDT SGSGSSLFSR FSFS
001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS
Arabidopsis Description
GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.