Factsheet for VIT_04s0210g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g07360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66030.1	VIT_04s0008g07360.t01	AT2G24765.1	16236155
AT5G66030.1	VIT_04s0008g07360.t01	AT2G24765.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28898	Soybean	cytosol	14.41	87.79
HORVU2Hr1G059110.2	Barley	cytosol	11.9	71.97
KRH76555	Soybean	cytosol	68.55	68.98
KRH28897	Soybean	cytosol	54.76	66.21
Solyc02g082840.2.1	Tomato	nucleus	65.54	65.87
AT5G66030.1	Thale cress	nucleus	62.78	63.58
GSMUA_AchrUn_...	Banana	nucleus	7.77	62.0
KXG36201	Sorghum	cytosol	55.14	56.85
Os07t0472500-01	Rice	nucleus	55.39	55.6
TraesCS2B01G259500.1	Wheat	mitochondrion	53.88	53.02
TraesCS2A01G234700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	53.88	53.02
TraesCS2D01G238300.1	Wheat	mitochondrion	53.76	52.9
Zm00001d006357_P001	Maize	cytosol	51.25	52.64
HORVU2Hr1G059170.7	Barley	mitochondrion	53.13	52.28
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, vacuole	21.8	49.15
GSMUA_AchrUn_...	Banana	cytosol	7.64	42.07
GSMUA_AchrUn_...	Banana	nucleus	14.66	33.52

Protein Annotations

EntrezGene:100266353	wikigene:100266353	MapMan:22.6.7.1	ProteinID:CCB61046	ProteinID:CCB61046.1	ncoils:Coil
UniProt:F6I279	EMBL:FN596531	GO:GO:0000003	GO:GO:0000795	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	InterPro:GRIP_dom	InterPro:IPR000237	EntrezGene:LOC100266353	wikigene:LOC100266353	PFAM:PF01465
PFscan:PS50913	PANTHER:PTHR23160	PANTHER:PTHR23160:SF10	SMART:SM00755	TIGR:TC57126	UniParc:UPI000210A817
ArrayExpress:VIT_04s0210g00200	EnsemblPlantsGene:VIT_04s0210g00200	EnsemblPlants:VIT_04s0210g00200.t01	unigene:Vvi.19181	RefSeq:XP_002263406	RefSeq:XP_002263406.2
RefSeq:XP_010649308.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:20563542..20579832

Molecular Weight (calculated)

90921.2 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.879

Length

798 amino acids

Sequence
(BLAST)

001: MSMDEGNVSE TPESQTADAL KPEIQLVDTR LENDANHAKE NGLFDGKPHV DATHDQLVLM VMELNLQNEY LKSQFEGLQA FHSESDGSHQ QTRETVQEGA
101: ASVDVKGLHE KIESLSSELF EEKQTRVAAE EALKHLRAAH SAADAKAQEL STKLAEAQQK MEQEIKERDE KYSELDSKFS RLHKRAKQRI QDVQKEKDDL
201: EARLRDMNET TERASSQQSS LQQELERTRQ QANDALRAID AERQQLRSEN NKLRDKIDEL RRSFEPKENA IETLQQSLME KDQMLEDMKG LLQAAEEKRQ
301: ASIAELSAKH QKTVESLEAQ LADAVSERTK ATETISSLQV LIAEKESKIA EMDAASSGEA ARLRAAMETV KGELVHLKHE HEKEKESWEA ASQALKTKLE
401: FAESNCIRAE IEAAKIRSQL ELELSVQTQL LSTRDAELMA SKEEIKRLES EFSSYKVRAH ALLQKKEAEL AAAKDSEQLK AQEEALKEAE KEILLATEER
501: DRILRDLQDA LANHDKELAT RDAALSSAKQ QIKSIEKKLD SANARYQSEK EAWEINLQNL EETWRLRCEA LAAQNEVSSG QELQKELEEL NLQYKRLKAE
601: HESFRDLAER MIEGKDNEIS KLLDENKTLQ QSLESRPAAY HNDNYNTAFH KQEALNSSTS AAEQQILLLA RQQAQREEEL AQSQRHILAL QEEIEELERE
701: NRLHSQQEAM LKEEFRNMER TQKREGVDMT YLKNVILKLL ETGEVEALLP VIGMLLQFSP EEMQKCHQAY HSSTEVPPTP ASDAPGSAHS LFSRFSFS

Best Arabidopsis Sequence Match ( AT5G66030.1 )
(BLAST)

001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS

Arabidopsis Description

GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.