Factsheet for GSMUA_AchrUn_randomP14410_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20560_001	Banana	plastid	4.58	18.12
GSMUA_Achr7P23880_001	Banana	plasma membrane	4.41	5.22
GSMUA_Achr3P20510_001	Banana	plasma membrane	4.14	4.01
GSMUA_Achr7P23890_001	Banana	plasma membrane	3.88	3.76
GSMUA_Achr8P05670_001	Banana	plasma membrane	2.64	3.19
GSMUA_AchrUn_...	Banana	mitochondrion	0.79	2.45
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	0.35	2.35
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	0.62	2.26
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	0.53	2.03
GSMUA_AchrUn_...	Banana	extracellular	0.53	1.78
CDX68436	Canola	plasma membrane	0.18	0.68
GSMUA_Achr1P13520_001	Banana	plastid	0.18	0.64
GSMUA_Achr3P20520_001	Banana	plasma membrane, plastid	0.26	0.49
Os09t0360900-01	Rice	plasma membrane	0.09	0.22
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSMUA_AchrUn_randomG14410_001	EnsemblPlants:GSMUA_AchrUn_randomP14410_001
EnsemblPlants:GSMUA_AchrUn_randomT14410_001	InterPro:IPR003439	UniProt:M0U950	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF36	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000294CB99	SEG:seg	:	:	:

Description

ABC transporter A family member 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14410_001]

Coordinates

chrchrUn_random:+:67959928..67993591

Molecular Weight (calculated)

126713.0 Da

IEP (calculated)

7.390

GRAVY (calculated)

0.078

Length

1135 amino acids

Sequence
(BLAST)

0001: MILRTLKRPS ILTPVFLLCV FCSLFLKHRY GVGYTLTIVQ TSPGVSVATD IVHRHVPTAT CLSNVGTEIS FRLPLASSTS FENMFREIEN YIRGPSKYQE
0101: SCSSFCQGIE SYGISVTTLE EVFLRVSGDN FHEDDENGYY ISRTGSMNTI IEASTYTLTK SPNSKFLFGV HLKFVRWICA TLGRICTSIF DAACGFVTLF
0201: TLKFCSCGLI PRSIFWQHSK ALLIKRAIYC RRDRRSVIFQ LFIPALFLLF GLLFLKIKPH PDQYSITLTT SYFNPLLNGG GGGGPIPFNL SLSIAEKVAS
0301: HVHGGWIQKQ EPRSYRFPDS EKILADAIEA AGPQLGPALL SMSEYLITSF NESYQSRYGA VVMDDQKNDG SVGYTVLHNS SCQHAAPTYI NLMNAAILKM
0401: ATGNEHLMIQ TRNHPLPMTI SQRSQRHDLD AFSASIIVNI AFSFIPASFA VTIVKEREVK AKHQQLISGV SVLSYWVSTY IWDFVSFLFP TSLAVILFFM
0501: FDLNQFVGTG CFLPTIVLFL EYGLAIGSST YCLTFFFSEH TIAQNVVLLI HFFSGLVLMV ISFVLGLMDA TKSANSLLKN FFRLSPGFCF ADGLASLALR
0601: RQGMKQGSGS STLDWNVTGA SICYLAFESI MYFLFTIALE ILPFQKLNLM AIKEWWQNVL TLQHDGSNDH FQHLLGSYED SSSSIANEDI DVKAERQRIN
0701: SGLVDNAIIY LHNLRKVYHA RKNHARKVAV HSLTFSVQEG ECFGFLGTNG AGKTTTLSML TGEEKPTDGT AYIFGKDIRL YPKAARRHIG YCPQFDALLE
0801: NLTAREHLQL YARLKGVPEI NLDDVVKEKM VEFDLWKYAD KPSYCLSGGN KRKLSVAIAM IGDPPIVILD EPSTGMDPIA KRFMWDVISR LSTRQGKTAV
0901: ILTTHSMNEA QALCTRIGVM VGGQLKCLGS PQHLKTRFGN YLELELKPSD VSSMEIENLC KKIQENLFDI PSHSKSIISD LEMCIRGTGT ISVQNISEIS
1001: LSREMINLIG RMLGNEESTQ MAVLPVPSSD GLYGEQFSEQ LFRDGGIPLR IFSEWWLAKQ KLLLIDSFFL SSFPGASFHG SNGLSIRYQL PYGEGSSLAD
1101: IFGHIEHNRE ALGIEEYSIN QSTLETIFNH FASAQ

Best Arabidopsis Sequence Match ( AT2G41700.1 )
(BLAST)

0001: MGSSKRQFKA MLRKNWLLKT RHPFVTSAEI LLPTIVMLLL IAVRTRVDTT IHPAHSNIDK DTVVEVGKGN SPSFPEVLKL LLAEGDFLAF APDTDETNNM
0101: IDILSLKFPE LRLVTKIFKD DIELETYITS AHYGVCSEVR NCSNPKIKGA VVFHEQGPHL FDYSIRLNHT WAFAGFPNVK SIMDTNGPYI NDLEMGINTI
0201: PTMQYSFSGF LTLQQVVDSF IIFASQQNND LPLSHSNLSS ALRFELPWTL FSPSVIRMVP FPTREYTDDE FQSIVKSVMG LLYLLGFLFP ISRLISYSVF
0301: EKEQKIREGL YMMGLKDEIF HLSWFITYAL QFALCSGIIT ACTMGSLFKY SDKTLVFTYF FLFGLSAIML SFMISTFFTR AKTAVAVGTL TFLGAFFPYY
0401: TVNDESVSMV LKVVASLLSP TAFALGSINF ADYERAHVGL RWSNIWRASS GVSFFVCLLM MLLDSILYCA LGLYLDKVLP RENGVRYPWN FIFSKYFGRK
0501: KNNLQNRIPG FETDMFPADI EVNQGEPFDP VFESISLEMR QQELDGRCIQ VRNLHKVYAS RRGNCCAVNS LQLTLYENQI LSLLGHNGAG KSTTISMLVG
0601: LLPPTSGDAL ILGNSIITNM DEIRKELGVC PQHDILFPEL TVREHLEMFA VLKGVEEGSL KSTVVDMAEE VGLSDKINTL VRALSGGMKR KLSLGIALIG
0701: NSKVIILDEP TSGMDPYSMR LTWQLIKKIK KGRIILLTTH SMDEAEELGD RIGIMANGSL KCCGSSIFLK HHYGVGYTLT LVKTSPTVSV AAHIVHRHIP
0801: SATCVSEVGN EISFKLPLAS LPCFENMFRE IESCMKNSVD RSKISEIEDS DYPGIQSYGI SVTTLEEVFL RVAGCNLDIE DKQEDIFVSP DTKSSLVCIG
0901: SNQKSSMQPK LLASCNDGAG VIITSVAKAF RLIVAAVWTL IGFISIQCCG CSIISRSMFW RHCKALFIKR ARSACRDRKT VAFQFIIPAV FLLFGLLFLQ
1001: LKPHPDQKSI TLTTAYFNPL LSGKGGGGPI PFDLSVPIAK EVAQYIEGGW IQPLRNTSYK FPNPKEALAD AIDAAGPTLG PTLLSMSEFL MSSFDQSYQS
1101: RYGSILMDGQ HPDGSLGYTV LHNGTCQHAG PIYINVMHAA ILRLATGNKN MTIQTRNHPL PPTKTQRIQR HDLDAFSAAI IVNIAFSFIP ASFAVPIVKE
1201: REVKAKHQQL ISGVSVLSYW LSTYVWDFIS FLFPSTFAII LFYAFGLEQF IGIGRFLPTV LMLLEYGLAI ASSTYCLTFF FTEHSMAQNV ILMVHFFSGL
1301: ILMVISFVMG LIPATASANS YLKNFFRLSP GFCFSDGLAS LALLRQGMKD KSSHGVFEWN VTGASICYLG LESIFYFLVT LGLELMPVQK VMSFSIGEWW
1401: QNLKAFKQGA GSSSTEPLLK DSTGAISTDM EDDIDVQEER DRVISGLSDN TMLYLQNLRK VYPGDKHHGP KVAVQSLTFS VQAGECFGFL GTNGAGKTTT
1501: LSMLSGEETP TSGTAFIFGK DIVASPKAIR QHIGYCPQFD ALFEYLTVKE HLELYARIKG VVDHRIDNVV TEKLVEFDLL KHSHKPSFTL SGGNKRKLSV
1601: AIAMIGDPPI VILDEPSTGM DPVAKRFMWD VISRLSTRSG KTAVILTTHS MNEAQALCTR IGIMVGGRLR CIGSPQHLKT RYGNHLELEV KPNEVSNVEL
1701: ENFCQIIQQW LFNVPTQPRS LLGDLEVCIG VSDSITPDTA SASEISLSPE MVQRIAKFLG NEQRVSTLVP PLPEEDVRFD DQLSEQLFRD GGIPLPIFAE
1801: WWLTKEKFSA LDSFIQSSFP GATFKSCNGL SIKYQLPFGE GGLSLADAFG HLERNRNRLG IAEYSISQST LETIFNHFAA NS

Arabidopsis Description

ABCA1ABC transporter A family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q84M24]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.