Factsheet for GSMUA_Achr3P20540_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	14.12	20.0
CDY62594	Canola	cytosol	51.76	19.26
CDY64180	Canola	plasma membrane	62.94	17.07
CDX68434	Canola	plasma membrane	64.71	15.49
CDY02116	Canola	plasma membrane	70.59	14.29
GSMUA_Achr7P23880_001	Banana	plasma membrane	76.47	13.57
CDY52820	Canola	cytosol, nucleus, plasma membrane	68.82	13.33
Bra012928.1-P	Field mustard	plasma membrane	70.59	12.95
CDY23040	Canola	plasma membrane	71.76	12.79
PGSC0003DMT400046727	Potato	plasma membrane	70.0	12.74
AT5G61730.2	Thale cress	plasma membrane, plastid	70.59	12.63
TraesCS1A01G342900.2	Wheat	plasma membrane	71.76	12.63
AT5G61690.2	Thale cress	plasma membrane	70.59	12.59
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	71.18	12.54
HORVU1Hr1G075640.9	Barley	golgi	71.76	12.46
TraesCS1B01G356100.2	Wheat	plasma membrane	70.59	12.45
Os08t0398000-01	Rice	plasma membrane	70.59	12.4
VIT_17s0000g05850.t01	Wine grape	plasma membrane	69.41	12.32
CDY23800	Canola	plasma membrane	65.88	12.24
CDY24159	Canola	golgi, mitochondrion	67.06	12.17
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	68.24	12.07
CDY23042	Canola	plasma membrane	66.47	12.06
Zm00001d032279_P005	Maize	golgi, plastid	68.24	11.96
GSMUA_Achr1P13520_001	Banana	plastid	21.76	11.82
CDY36933	Canola	golgi, mitochondrion	67.06	11.81
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	67.65	11.7
KRH54517	Soybean	plasma membrane	65.88	11.58
Bra018116.1-P	Field mustard	golgi, mitochondrion	67.06	11.56
Solyc06g070960.1.1	Tomato	plasma membrane	62.35	11.45
CDY02118	Canola	plasma membrane	66.47	11.36
KRH63387	Soybean	plasma membrane, plastid	64.12	11.33
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	18.82	10.81
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	18.24	10.0
Bra012930.1-P	Field mustard	plasma membrane	38.82	7.27
GSMUA_AchrUn_...	Banana	extracellular	12.94	6.53
GSMUA_Achr8P05670_001	Banana	plasma membrane	35.29	6.38
GSMUA_Achr7P23890_001	Banana	plasma membrane	36.47	5.3
GSMUA_Achr3P20510_001	Banana	plasma membrane	35.29	5.12
GSMUA_Achr3P20560_001	Banana	plastid	2.94	1.74
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	2.35	0.35
GSMUA_AchrUn_...	Banana	mitochondrion	0.59	0.27
GSMUA_Achr3P20520_001	Banana	plasma membrane, plastid	0.59	0.16
CDY62596	Canola	cytosol, plasma membrane, vacuole	0.0	0.0
CDX68435	Canola	mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:ABCA	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr3G20540_001	EnsemblPlants:GSMUA_Achr3P20540_001	EnsemblPlants:GSMUA_Achr3T20540_001	InterPro:IPR003439	UniProt:M0SGC0
InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193	SUPFAM:SSF52540	UniParc:UPI000295F4E7

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G20540_001]

Coordinates

chr3:+:21661801..21663021

Molecular Weight (calculated)

18535.8 Da

IEP (calculated)

9.730

GRAVY (calculated)

0.206

Length

170 amino acids

Sequence
(BLAST)

001: MVHFDNLFCL LGPNGAGKTT VINCLTGITP VTGGDALIYG YSVRSSVGMS KIRRMIGVCP QFDILWDELS ALEHLHLFAS IKGLPPSRIK SVAEKSLADV
101: KLIAAARVRS GSYSGGMKRR LSVAIAFIGD PKLVFLDEPF QNGLYLPRIQ CFHIPPSYSL DHTKASPFLK

Best Arabidopsis Sequence Match ( AT5G61730.1 )
(BLAST)

001: MTLREGLPLF HQQFTALFKK NLLLSWRNKR ATCLHLFSSF FFILLIFSIE ESSKASDLTS TRHKNVTDPK ALVSLPILPC EDKFFVRLPC FDFVWSGNQS
101: RRVTDIVSAI MANNPGRPIP TNKVQSFTKP EEVDAWFMSH PSQVTGALHF VEKNATVISY GIQTNSSSEK KRGRREDPTF KFLVPLQIAA EREIARSLIG
201: DPKFSWDFGF KEFARPAIGG EVIISAFYLM GPVFFLAFSM FGFVLQLGSV VTEKELKLRE AMTTMGVYES AYWLSWLIWE GILTFVSSLF LVLFGMMFQF
301: EFFLKNSFVL VFLLFFLFQF NMIGLAFALS SIISKSSSAT TVGFLVFLVG FITQIVTTAG FPYSSAYSIG SRVIWSLFPP NTFSAGLQLL LEATSSPGDS
401: GISWSERAIC AGGESTCVIT TNKIYIWLVG TFFFWFVLAL YFDNIIPNAS GVRKSIFYFL KPSYWTGKEG NKVEVPPVEH ITPEDEDVLE EEILVKQQAM
501: DGRVDPNIAV QIHGLAKTYP GTTKLGCCKC TKTSPFHAVK GLWMNIAKDQ LFCLLGPNGA GKTTTISCLT GINPVTGGDA KIYGNSIRSS VGMSNIRKMI
601: GVCPQFDILW DALSSEEHLH LFASIKGLPP SSIKSIAEKL LVDVKLTGSA KIRAGSYSGG MKRRLSVAIA LIGDPKLVFL DEPTTGMDPI TRRHVWDIIQ
701: ESKKGRAIIL TTHSMEEADI LSDRIGIMAK GRLRCIGTSI RLKSRFGTGF VATVSFIENK KDGAPEPLKR FFKERLKVEP TEENKAFMTF VIPHDKEQLL
801: KGFFAELQDR ESEFGIADIQ LGLATLEEVF LNIARRAELE SATVEGTMVT LELESGIAVE IPVGARFVGI PGTENAENPR GLMVEVYWQQ DGSGSMCISG
901: HSAEMRIPEN VSVIYEPSSQ VLGHGQRRVR GIVIDYESNN

Arabidopsis Description

ABCA9ABC transporter A family member 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.