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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, plasma membrane
BaCelLo:cytosol
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62594 Canola cytosol 61.88 84.9
CDY02116 Canola plasma membrane 90.27 67.38
GSMUA_Achr3P20540_001 Banana cytosol, extracellular, nucleus 17.07 62.94
CDY52820 Canola cytosol, nucleus, plasma membrane 87.88 62.76
CDY23040 Canola plasma membrane 90.91 59.75
GSMUA_Achr3P20560_001 Banana plastid 25.36 55.4
CDX68434 Canola plasma membrane 62.68 55.35
AT5G61730.2 Thale cress plasma membrane, plastid 83.41 55.05
CDY23800 Canola plasma membrane 79.11 54.21
CDY23042 Canola plasma membrane 78.47 52.51
CDY24159 Canola golgi, mitochondrion 75.12 50.27
CDY02118 Canola plasma membrane 78.79 49.65
CDY36933 Canola golgi, mitochondrion 75.6 49.12
VIT_17s0000g05850.t01 Wine grape plasma membrane 67.94 44.47
PGSC0003DMT400046727 Potato plasma membrane 65.87 44.22
KRH54517 Soybean plasma membrane 66.83 43.33
GSMUA_Achr7P23880_001 Banana plasma membrane 65.07 42.59
EES14950 Sorghum mitochondrion, plasma membrane, plastid 64.91 42.35
KRH63387 Soybean plasma membrane, plastid 64.75 42.2
TraesCS1A01G342900.2 Wheat plasma membrane 64.75 42.03
TraesCS1B01G356100.2 Wheat plasma membrane 64.43 41.91
TraesCS1D01G345100.2 Wheat mitochondrion, plasma membrane, plastid 64.43 41.87
Zm00001d032279_P005 Maize golgi, plastid 64.59 41.75
Os08t0398000-01 Rice plasma membrane 63.96 41.43
HORVU1Hr1G075640.9 Barley golgi 64.27 41.16
Solyc06g070960.1.1 Tomato plasma membrane 55.02 37.26
CDY62596 Canola cytosol, plasma membrane, vacuole 16.43 33.55
CDY02115 Canola extracellular, mitochondrion, plasma membrane, plastid 17.54 30.14
CDX94927 Canola cytosol 5.26 27.73
CDY23043 Canola cytosol, mitochondrion 20.73 25.39
CDX68439 Canola nucleus 6.22 24.68
CDY02120 Canola cytosol, nucleus, plasma membrane 24.08 22.91
CDY31786 Canola cytosol, nucleus, plasma membrane 24.08 22.88
CDY58413 Canola cytosol, plastid 8.61 19.71
CDX69605 Canola plastid 8.61 19.71
CDX68438 Canola endoplasmic reticulum, extracellular, plasma membrane 12.12 17.84
CDY36932 Canola endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid 25.2 17.83
CDY01873 Canola cytosol 7.5 17.8
CDX96058 Canola cytosol 7.34 17.42
CDY62599 Canola plasma membrane 24.08 17.38
CDX77874 Canola plasma membrane 22.65 17.13
CDY24158 Canola plasma membrane 25.2 17.06
CDY02114 Canola plasma membrane 24.08 17.02
CDY57805 Canola plastid 8.93 17.02
CDY23039 Canola plasma membrane 24.08 17.0
CDY36930 Canola plasma membrane 25.36 16.88
CDY24157 Canola plastid 25.52 16.82
CDY21797 Canola plasma membrane 24.24 16.81
CDY39546 Canola plasma membrane 25.04 16.79
CDY36931 Canola plastid 24.88 16.76
CDY16404 Canola plastid 8.77 16.72
CDX77421 Canola plasma membrane 24.88 16.68
CDX83025 Canola plasma membrane 25.04 16.67
CDY24156 Canola plasma membrane 24.88 16.56
CDX68440 Canola cytosol, mitochondrion 3.67 16.55
CDX68441 Canola plasma membrane 24.72 16.45
CDY23798 Canola nucleus, peroxisome, plasma membrane 9.89 16.15
CDY24573 Canola plasma membrane 3.99 15.72
CDX68436 Canola plasma membrane 6.54 13.95
CDY39288 Canola cytosol 3.51 11.11
CDY22536 Canola mitochondrion, plasma membrane 29.19 9.88
CDY35403 Canola mitochondrion, plasma membrane 28.87 9.73
CDX68435 Canola mitochondrion, plastid 3.99 9.58
CDY23799 Canola cytosol, peroxisome, plasma membrane 0.64 1.96
CDY02119 Canola endoplasmic reticulum, plasma membrane, plastid 0.48 1.68
Protein Annotations
MapMan:24.1.3.2.1Gene3D:3.40.50.300MapMan:5.8.5GO:A0A078JG48UniProt:A0A078JG48InterPro:ABCA
InterPro:ABC_transporter-likeEnsemblPlants:CDY64180ProteinID:CDY64180ProteinID:CDY64180.1ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00040962001InterPro:IPR003439InterPro:P-loop_NTPasePFAM:PF00005
PFAM:PF12698PFscan:PS50893PANTHER:PTHR19229PANTHER:PTHR19229:SF193SUPFAM:SSF52540TMHMM:TMhelix
UniParc:UPI0004EE03C1SEG:seg::::
Description
BnaCnng43390DBnaCnng43390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG48]
Coordinates
chrLK034414:-:25971..29287
Molecular Weight (calculated)
69734.7 Da
IEP (calculated)
8.519
GRAVY (calculated)
0.157
Length
627 amino acids
Sequence
(BLAST)
001: MFSFVLQLGS LATEKELKLR QAMTVMGVYD TPYWLSWLIW EGILTFVSSL FLVLFGMMFQ LDFFLKNSFF VIFLLFLLFQ INMISLAFML SSFIRKSFSA
101: TTVGFLVFLI GFITQTVATE ENLHMACGYI FFWFVLAIYF DNIIPNASGE RKTIFYFLKP SYWTGKEGNK VEVPPIEHLT PDDQDVLEEE TLVKKQAMDG
201: TVVPNISVQI HGRAKMYPGT TKLGCCKCTK TSPFHAVKVI NNSCCMNIAK DQLFCLLGPN GAWKKTTISC LTGINPVTGG DALIYGDSIR SSVGMSNIRK
301: MIGVCPQVRS KHLHLFASIK GLPPASIKPI AEKLLADVKL TGTAKIRAGS YCGGMKRRLS VGIALIGDPK LVFLDEPTTG MDPITRRHVW DIIQESKKGR
401: AIILTTHSME EADILGDRIG IMAKGRLRCI GTSIRLKSRF GTGFITTVSF LENKNNGAGT SREPLKRFFK KHLKVEPIEE KKAFMTFVIS HDKEKLLALQ
501: YRESEFGISN IQLGLATLEE VFLNIARWAE LESATAEGTV VTLELESGIL VEIPVGARFV GIPGTENAEN PRGMMVEVYW QQDGSGLMCI SGHSPEMRIP
601: QNVSVLYEPP SQVLGVGSNE FGFRDGL
Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)
001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS
Arabidopsis Description
ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.