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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02116 Canola plasma membrane 86.1 90.0
CDY62594 Canola cytosol 46.24 88.84
CDY64180 Canola plasma membrane 62.76 87.88
CDY62596 Canola cytosol, plasma membrane, vacuole 30.41 86.97
CDY23040 Canola plasma membrane 93.51 86.06
CDY02115 Canola extracellular, mitochondrion, plasma membrane, plastid 33.14 79.73
AT5G61730.2 Thale cress plasma membrane, plastid 81.89 75.68
CDY23042 Canola plasma membrane 77.9 73.0
CDY23800 Canola plasma membrane 74.72 71.69
GSMUA_Achr3P20540_001 Banana cytosol, extracellular, nucleus 13.33 68.82
CDY02118 Canola plasma membrane 77.79 68.64
CDY24159 Canola golgi, mitochondrion 69.82 65.42
CDY36933 Canola golgi, mitochondrion 71.07 64.66
CDX68434 Canola plasma membrane 50.34 62.25
PGSC0003DMT400046727 Potato plasma membrane 63.9 60.06
VIT_17s0000g05850.t01 Wine grape plasma membrane 65.49 60.02
KRH54517 Soybean plasma membrane 63.55 57.7
GSMUA_Achr3P20560_001 Banana plastid 18.68 57.14
GSMUA_Achr7P23880_001 Banana plasma membrane 62.19 56.99
TraesCS1B01G356100.2 Wheat plasma membrane 61.62 56.12
TraesCS1A01G342900.2 Wheat plasma membrane 61.73 56.11
KRH63387 Soybean plasma membrane, plastid 61.39 56.03
TraesCS1D01G345100.2 Wheat mitochondrion, plasma membrane, plastid 61.5 55.96
EES14950 Sorghum mitochondrion, plasma membrane, plastid 61.05 55.78
Os08t0398000-01 Rice plasma membrane 61.28 55.58
HORVU1Hr1G075640.9 Barley golgi 61.62 55.26
Zm00001d032279_P005 Maize golgi, plastid 60.71 54.95
Solyc06g070960.1.1 Tomato plasma membrane 54.44 51.62
CDX68435 Canola mitochondrion, plastid 15.15 50.96
CDY02120 Canola cytosol, nucleus, plasma membrane 21.07 28.07
CDY31786 Canola cytosol, nucleus, plasma membrane 21.07 28.03
CDX94927 Canola cytosol 3.76 27.73
CDX68439 Canola nucleus 4.9 27.22
CDY23043 Canola cytosol, mitochondrion 15.83 27.15
CDY24573 Canola plasma membrane 4.56 25.16
CDX77874 Canola plasma membrane 22.21 23.52
CDY21797 Canola plasma membrane 23.58 22.9
CDY36932 Canola endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid 22.67 22.46
CDY62599 Canola plasma membrane 22.21 22.44
CDY02114 Canola plasma membrane 22.44 22.21
CDY23039 Canola plasma membrane 22.32 22.07
CDY24158 Canola plasma membrane 23.01 21.81
CDY36930 Canola plasma membrane 23.23 21.66
CDY58413 Canola cytosol, plastid 6.72 21.53
CDY24156 Canola plasma membrane 23.01 21.44
CDY24157 Canola plastid 23.12 21.35
CDY36931 Canola plastid 22.55 21.27
CDX83025 Canola plasma membrane 22.78 21.23
CDX69605 Canola plastid 6.61 21.17
CDY39546 Canola plasma membrane 22.44 21.07
CDX77421 Canola plasma membrane 22.32 20.96
CDX68441 Canola plasma membrane 22.44 20.91
CDX68438 Canola endoplasmic reticulum, extracellular, plasma membrane 10.14 20.89
CDY23798 Canola nucleus, peroxisome, plasma membrane 9.11 20.83
CDX68440 Canola cytosol, mitochondrion 3.19 20.14
CDY01873 Canola cytosol 5.81 19.32
CDX96058 Canola cytosol 5.69 18.94
CDY16404 Canola plastid 6.95 18.54
CDY57805 Canola plastid 6.83 18.24
CDX68436 Canola plasma membrane 5.24 15.65
CDY22536 Canola mitochondrion, plasma membrane 26.65 12.63
CDY39288 Canola cytosol 2.85 12.63
CDY35403 Canola mitochondrion, plasma membrane 26.42 12.47
CDY02119 Canola endoplasmic reticulum, plasma membrane, plastid 1.37 6.7
CDY23799 Canola cytosol, peroxisome, plasma membrane 1.48 6.37
Protein Annotations
MapMan:24.1.3.2.1Gene3D:3.40.50.300MapMan:5.8.5GO:A0A078IP41UniProt:A0A078IP41InterPro:ABCA
InterPro:ABC_transporter-likeEnsemblPlants:CDY52820ProteinID:CDY52820ProteinID:CDY52820.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00007894001InterPro:IPR003439InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF12698
PFscan:PS50893PANTHER:PTHR19229PANTHER:PTHR19229:SF193SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0004EE224A
SEG:seg:::::
Description
BnaCnng23540DBnaCnng23540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP41]
Coordinates
chrLK033134:+:3535..14094
Molecular Weight (calculated)
97539.7 Da
IEP (calculated)
8.161
GRAVY (calculated)
0.082
Length
878 amino acids
Sequence
(BLAST)
001: MEASDVRSSE HLNITDPKAL ASHPIPPCDD KFNTKFPCYD FVWSGNQSRR VSDIVSAIMA NNPGRPIPTN KVKSFKGPEE VDVWFTSHPL HAPGALHFTE
101: RNATVISYGV QTNSSSATKR GRTEDPTFKF LVPLQIAAER EIARFLIGDP KFGWSFGFKE FPQPVVAKDV TISPLNLMGP VFFLAFSMFG FVLQLGSLAT
201: EKELKLRQAM TVMGVYDTAY WLSWLIWEGI LTFVSSLLLV LFGMMFQFNF FLKNSFFVVF LLFLLFQFNM ISLAFMLSSF ISKSSSATTV GFLVFLIGFI
301: TQTVATGGFP YSSTHSLSRP VIWSFFPPNT FSAGFQLLIE ATSVPGSPGI SWSKRDVCSK MDDATCFLTM NKIYIWLVRT FFSGLCVHSI YFDNIIPNAS
401: GVRKTIIYFL KPSYWTGKEG NKVEVPPVEH LTPDDQDVLE EETLVKKQAM DGTVVPNIAV QIHGLAKMYP GMIKLGNQSF LLCMNIAKDQ LFCLLGPNGA
501: WKKTTISCLT GINPVTGGDA LIYGDSIRSS VGMSNIRKMI GVCPQFDILW DALSSEEHLH LFASIKGLPP VSIKPIAEKL LADVKLTGAA KIRAGSYCGG
601: MKRRLSVAIA LIGDPKLVFL DEPTTGMDPI TRRHVWDIIQ ESKKGRAIIL TMHSMEEADI LGDRIGIMAK GRLRCIGTSI RLKSRFGTGF ITTVSFLENK
701: NNGAGNSPEP LKRFFKKHLK VEPIEEKKAF MTFVIPHDKE KLLVLQYREY EFGISDIQLG LATLEEVFLN IARWAELESA TAEGTVVTLE LESGILVEIP
801: VGARFVGIPG TENAENPRGM MVEVYWQQDG SGSMCISGHS PEMRTPQNFS VLYEPPSQVL GRTQRRVRGS VIAYESSD
Best Arabidopsis Sequence Match ( AT5G61730.1 )
(BLAST)
001: MTLREGLPLF HQQFTALFKK NLLLSWRNKR ATCLHLFSSF FFILLIFSIE ESSKASDLTS TRHKNVTDPK ALVSLPILPC EDKFFVRLPC FDFVWSGNQS
101: RRVTDIVSAI MANNPGRPIP TNKVQSFTKP EEVDAWFMSH PSQVTGALHF VEKNATVISY GIQTNSSSEK KRGRREDPTF KFLVPLQIAA EREIARSLIG
201: DPKFSWDFGF KEFARPAIGG EVIISAFYLM GPVFFLAFSM FGFVLQLGSV VTEKELKLRE AMTTMGVYES AYWLSWLIWE GILTFVSSLF LVLFGMMFQF
301: EFFLKNSFVL VFLLFFLFQF NMIGLAFALS SIISKSSSAT TVGFLVFLVG FITQIVTTAG FPYSSAYSIG SRVIWSLFPP NTFSAGLQLL LEATSSPGDS
401: GISWSERAIC AGGESTCVIT TNKIYIWLVG TFFFWFVLAL YFDNIIPNAS GVRKSIFYFL KPSYWTGKEG NKVEVPPVEH ITPEDEDVLE EEILVKQQAM
501: DGRVDPNIAV QIHGLAKTYP GTTKLGCCKC TKTSPFHAVK GLWMNIAKDQ LFCLLGPNGA GKTTTISCLT GINPVTGGDA KIYGNSIRSS VGMSNIRKMI
601: GVCPQFDILW DALSSEEHLH LFASIKGLPP SSIKSIAEKL LVDVKLTGSA KIRAGSYSGG MKRRLSVAIA LIGDPKLVFL DEPTTGMDPI TRRHVWDIIQ
701: ESKKGRAIIL TTHSMEEADI LSDRIGIMAK GRLRCIGTSI RLKSRFGTGF VATVSFIENK KDGAPEPLKR FFKERLKVEP TEENKAFMTF VIPHDKEQLL
801: KGFFAELQDR ESEFGIADIQ LGLATLEEVF LNIARRAELE SATVEGTMVT LELESGIAVE IPVGARFVGI PGTENAENPR GLMVEVYWQQ DGSGSMCISG
901: HSAEMRIPEN VSVIYEPSSQ VLGHGQRRVR GIVIDYESNN
Arabidopsis Description
ABCA9ABC transporter A family member 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT5]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.